| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,989,418 – 8,989,520 |
| Length | 102 |
| Max. P | 0.997397 |
| Location | 8,989,418 – 8,989,520 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 74.35 |
| Mean single sequence MFE | -41.55 |
| Consensus MFE | -24.54 |
| Energy contribution | -25.43 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.33 |
| Mean z-score | -3.04 |
| Structure conservation index | 0.59 |
| SVM decision value | 2.85 |
| SVM RNA-class probability | 0.997397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8989418 102 - 27905053 ---AUCAUCCUCAUCAUCGUCAUCGAUGAUGGCCAACCGACGCCGCUUGGCCGGCUCGCC---------AUCGACUUUGGCUGGCUUUUUGCGAGCCAAAAAGUUGGCCUCCUC ---.........(((((((....)))))))((((((((((.((((......)))))))..---------......(((((((.((.....)).)))))))..)))))))..... ( -42.80) >DroVir_CAF1 128735 92 - 1 ----U---CAUCGUCGUCGUCCUCGAUGACAGCUAGACGCCGUCGCUUGGCCGGCUCG---------------GUGCUGGCUGGCUUUUUGCGAGCCAGAAAAUUGAUAUCCUC ----.---.((((((((((....)))))))((((((.(((((..(((.....))).))---------------)))))))))(((((.....)))))........)))...... ( -35.80) >DroPse_CAF1 108745 108 - 1 ---CUCAUCG---UCGUCGUCAUCGAUGAUGGCCACACGUCGCCGUUUGGCGGGCUCCCCUCUGCCGAUAUCGACUUUUGCUGGCUUUUUGCGAGCCAGAAAGUUGGCAUCAUC ---..(((((---(((.......))))))))((((.(((....))).)))).(((........)))(((..((((((...(((((((.....))))))).))))))..)))... ( -44.30) >DroMoj_CAF1 138036 96 - 1 GCCGU---CGUCGUCGUCGUCAUCGAUGAUGGCCAGACGACGUCGCUUGGCCGGCUCG---------------GUGCUGGCUGGCUUCUUGCGUGCCAGAAAAUUGAUAUCCUC ((((.---((.(((((((((((((...))))))..))))))).))..)))).((.(((---------------((.(((((..((.....))..)))))...)))))...)).. ( -40.40) >DroAna_CAF1 114542 102 - 1 ---AUCAUCCUCGCCAUCGUCAUCGAUGAUGGCAAGUCGUCGCCGUUUGGCCGGCUCUUC---------AUCGACUUUGGCUGGCUUUUUGCGAGCCAGAAAGUUGGCCUCCUC ---.........(((((((((...)))))))))((((((..((((......)))).....---------..)))))).(((..((((((((.....))))))))..)))..... ( -41.10) >DroPer_CAF1 109891 108 - 1 ---CUCAUCG---UCGUCGUCAUCGAUGAUGGCCACACGUCGCCGUUUGGCGGGCUCCCCGCUGCCGGUAUCGACUUUUGCUGGCUUUUUGCGAGCCAGAAAGUUGGCAUCAUC ---..(((((---(((.......))))))))((((..((..((((...((((((...))))))..))))..))((((...(((((((.....))))))).))))))))...... ( -44.90) >consensus ___AUCAUCGUCGUCGUCGUCAUCGAUGAUGGCCAGACGUCGCCGCUUGGCCGGCUCGCC_________AUCGACUUUGGCUGGCUUUUUGCGAGCCAGAAAGUUGGCAUCCUC ............(((((((....))))))).(((((.((....)).)))))....................(((((((((((.((.....)).))))))..)))))........ (-24.54 = -25.43 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:43 2006