Locus 3335

Sequence ID 3R_DroMel_CAF1
Location 8,955,925 – 8,956,018
Length 93
Max. P 0.662275
window5373

overview

Window 3

Location 8,955,925 – 8,956,018
Length 93
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 93.50
Mean single sequence MFE -23.92
Consensus MFE -21.54
Energy contribution -21.82
Covariance contribution 0.28
Combinations/Pair 1.05
Mean z-score -1.22
Structure conservation index 0.90
SVM decision value 0.27
SVM RNA-class probability 0.662275
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8955925 93 + 27905053
AUUCCAUUGUGAGGCCACAUUGUGUCUUAAUUACGUUCUUAACUGGACUUGAGUGGCGUGUCCUCUUAGCCGGACUAACA-GCUUAACAAUGCC
....((((((((((((((...(((.......)))((((......))))....)))))..((((........)))).....-.))).)))))).. ( -24.70)
>DroPse_CAF1 82722 93 + 1
AUUCCAUUGUGUGGCCACAUUGUGUUUUAAUUACGUCCUUAACUGGACCUGAGUGGCGUGUCCUCUUAGCCCGACUAACA-GUUGAACAAUGCU
....((((((...(((((...(((.......)))((((......))))....)))))..............((((.....-)))).)))))).. ( -23.10)
>DroSim_CAF1 80900 93 + 1
AUUCCAUUGUGUAGCCACAUUGUGUCUUAAUUACGUUCUUAACUGGACUUGAGUGGCGUGUCCUCUUAGCCGGACUAACA-GCUUAACAAUGCC
....((((((...(((((...(((.......)))((((......))))....)))))..((((........)))).....-.....)))))).. ( -23.30)
>DroEre_CAF1 83306 93 + 1
AUUCCAUUGUGUGGCCACAUUGUGUCUUAAUUACGUUCUUAACUGGACUUGAGUGGCGUGUCCUCUUAGUCGGACUAACA-GCUUAACAAUGCC
....((((((...(((((...(((.......)))((((......))))....)))))..((((........)))).....-.....)))))).. ( -23.10)
>DroAna_CAF1 83257 94 + 1
AUUCCAUUGUGUGGCCACAUUGUGUCUUAAUUACGUUCUUAACUAGACUUGAGUGGCGUGUCCUGUUAGCCGGACUAACGGGCUUAACAAUGCC
....((((((...(((((.(((.((((...(((......)))..)))).))))))))..(.((((((((.....)))))))))...)))))).. ( -26.20)
>DroPer_CAF1 83927 93 + 1
AUUCCAUUGUGUGGCCACAUUGUGUUUUAAUUACGUCCUUAACUGGACCUGAGUGGCGUGUCCUCUUAGCCCGACUAACA-GUUGAACAAUGCU
....((((((...(((((...(((.......)))((((......))))....)))))..............((((.....-)))).)))))).. ( -23.10)
>consensus
AUUCCAUUGUGUGGCCACAUUGUGUCUUAAUUACGUUCUUAACUGGACUUGAGUGGCGUGUCCUCUUAGCCGGACUAACA_GCUUAACAAUGCC
....((((((...(((((...(((.......)))((((......))))....)))))..((((........))))...........)))))).. (-21.54 = -21.82 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:40 2006