| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,955,412 – 8,955,502 |
| Length | 90 |
| Max. P | 0.935143 |
| Location | 8,955,412 – 8,955,502 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.77 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -16.78 |
| Energy contribution | -16.87 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.935143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8955412 90 - 27905053 ---CUGUCGAUUAUGGCGGAAGCCAUAAAAGGUGCAAAAAUACCGCUUCGUAAGCUGUUUAGGGCCAGAGACAAAGGCUCCCAGC-------CAGCAGCA ---....((((((((((....)))))))..((((......))))...)))...(((((....(((..(((.......)))...))-------).))))). ( -30.00) >DroPse_CAF1 82128 88 - 1 ---AUGUCGAUUAUGGCAGAAGCCGUAAAAGGUGCAAAAAUGCCGCCUCGUAAGCUGUUUAGGGCCAGAGACAAAGGAAUCGGGCC-------GG--GCU ---.......(((((((....)))))))..(((........)))(((((....)........((((.((..(....)..)).))))-------))--)). ( -24.30) >DroEre_CAF1 82796 94 - 1 ---CUGUCGAUUAUGGCGGAAGCCAUAAAAGGUGCAAAAAUACCGCUUCGUAAGCUGUUUAGGGCCAGAGACAAAGGCUCCCAGUCCGCAGGAGG-AG-- ---.......(((((((....)))))))..((((......)))).((((((..((((....(((((.........))))).))))..)).)))).-..-- ( -29.40) >DroMoj_CAF1 102112 84 - 1 CUGUUGUCGAUUAUGGCAAAUGCCAUAAAAGGUGCAAAAAUGCCA-UUCGUAAGCUGCGAAAGG---AAGAAAAAAGUAGA-GGCUA--AG--------- .....(((..(((((((....)))))))..............((.-(((((.....))))).))---..............-)))..--..--------- ( -18.00) >DroAna_CAF1 82696 95 - 1 ---CGCUCGAUUAUGGCGGAAGCCAUAAAAGGUGCAAAAACGCCGCCUCGUAAGCUGUUUAGGGCCAGAGACAAAGGCACUGAGG-AGCAGCA-AUAUAA ---.(((((((((((((....)))))))..((((......))))...)))...(((.(((((.(((.........))).))))).-)))))).-...... ( -35.20) >DroPer_CAF1 83348 88 - 1 ---AUGUCGAUUAUGGCAGAAGCCGUAAAAGGUGCAAAAAUGCCGCCUCGUAAGCUGUUUAGGGCCAGAGACAAAGGAACCGCGCC-------GG--GCC ---..(((..(((((((....)))))))..(((((.........(.(((....(((......)))..))).)...(....))))))-------.)--)). ( -23.80) >consensus ___CUGUCGAUUAUGGCAGAAGCCAUAAAAGGUGCAAAAAUGCCGCCUCGUAAGCUGUUUAGGGCCAGAGACAAAGGCACCGAGCC_______GG__GC_ ....(((((((((((((....)))))))..((((......))))...))....(((......)))....))))........................... (-16.78 = -16.87 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:39 2006