| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,955,264 – 8,955,361 |
| Length | 97 |
| Max. P | 0.845388 |
| Location | 8,955,264 – 8,955,361 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 74.76 |
| Mean single sequence MFE | -26.33 |
| Consensus MFE | -14.05 |
| Energy contribution | -13.97 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8955264 97 - 27905053 CCAAGGGCAUUAAUAAAAUAAGGAUAAUUGGCAUAAGCAUAAUCACGUUUAAGCCAACAGCCAACGUGCAGCUGAGAC----------A----G------GAGCUG-GAAUUAGAAGU .....(((.(((......)))......(((((.(((((........))))).)))))..)))......(((((.....----------.----.------.)))))-........... ( -19.80) >DroVir_CAF1 95541 92 - 1 CACUGGGCAUUAAUAAAAUAAGGAUAAUUGGCAUAAGCAUAAUCACGUUUAAGCCAACAACCAACGAGCAGCUGAGACAGGCUAAGACA--------------------------GCG ..((.(((.(((......)))((....(((((.(((((........))))).)))))...))........))).))....(((.....)--------------------------)). ( -18.10) >DroPse_CAF1 81999 116 - 1 CGCUCGGCAUUAAUAAAAUAAGGAUAAUUGGCAUAAGCAUAAUCACGUUUAAGCCAGCAGCCAACGUGCAGCUGAGACG-GCUGACACACGGAGGCCCCACAGCUG-AAACGAGAGCA .(((((((.(((......)))......(((((.(((((........))))).)))))..)))..(((.((((((.(..(-(((..(....)..)))).).))))))-..))).)))). ( -39.20) >DroWil_CAF1 80297 96 - 1 -GCAGGGUAUUAAUAAAAUAAGGAUAAUUGGCAUAAGCAUAAUCACGUUUAAGCCAACAGCCAACGAGCAGAUGUGGC----------A----A-------AGCCCAAGUCGGGAGCA -...((((...................(((((.(((((........))))).)))))..((((.(.....)...))))----------.----.-------.))))............ ( -22.00) >DroAna_CAF1 82511 106 - 1 GCCUGGGCAUUAAUAAAAUAAGGAUAAUUGGCAUAAGCAUAAUCACGUUUAAGCCAACAGCCAACGUGCAGCUGAGACA-GGCAAGACA----G------GAGCCA-AAAUUAAAUUU (((((......................(((((.(((((........))))).)))))((((.........))))...))-)))......----.------......-........... ( -23.70) >DroPer_CAF1 83225 116 - 1 CGCUCGGCAUUAAUAAAAUAAGGAUAAUUGGCAUAAGCAUAAUCACGUUUAAGCCAGCAGCCAACGUGCAGCUGAGACG-GCUGACACACGGAGGCCCCACAGCAG-AAACGAGAGCA .(((((((.(((......)))......(((((.(((((........))))).)))))..)))..(((...((((.(..(-(((..(....)..)))).).))))..-..))).)))). ( -35.20) >consensus CGCUGGGCAUUAAUAAAAUAAGGAUAAUUGGCAUAAGCAUAAUCACGUUUAAGCCAACAGCCAACGUGCAGCUGAGAC__GCU_A_ACA____G_______AGCCG_AAACGAGAGCA ..((.(((.(((......)))((....(((((.(((((........))))).)))))...))........))).)).......................................... (-14.05 = -13.97 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:38 2006