Locus 3332

Sequence ID 3R_DroMel_CAF1
Location 8,953,336 – 8,953,426
Length 90
Max. P 0.952951
window5370

overview

Window 0

Location 8,953,336 – 8,953,426
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 80.10
Mean single sequence MFE -30.20
Consensus MFE -23.62
Energy contribution -24.15
Covariance contribution 0.53
Combinations/Pair 1.29
Mean z-score -2.55
Structure conservation index 0.78
SVM decision value 1.43
SVM RNA-class probability 0.952951
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8953336 90 + 27905053
----UGCAGUUGCGCUAACGAAGUUGUUUCUGUGGGCCGCAACGUUUUUGUGGUUAACUGGGCAGGGAUGUUGCCAGCUGAUUGUAUUGCUGCU
----.(((((..(((.((((....))))...)))(((.(((((((((((((((....))..)))))))))))))..))).........))))). ( -26.50)
>DroVir_CAF1 93782 90 + 1
----UGCAGUUGCACUAACGAAGUUGUUUCAGCUGGCCCUAAAGUUUUUGCGGUUAGCAGUGCAAUGUUGUUGCCGCUUGAUUGCAUAAGAGUU
----(((((((((..((((((.(((((....(((((((.(((.....))).)))))))...))))).))))))..))..)))))))........ ( -26.60)
>DroEre_CAF1 80727 89 + 1
----UGCAGUUGCGCUAACGAAGUUGUUUCUGUUGGCCGCAACGUUUUUGUGGUUAACUGGGCGAGGCUGUUGCCAGCUGAUUGCAUUGUUGC-
----((((((((.(((.......((((((..(((((((((((.....))))))))))).))))))(((....)))))))))))))).......- ( -31.90)
>DroWil_CAF1 78799 93 + 1
-UGUUGCAGUUUCGCUAACGAAGUUGUUUCAGUUGGCCGCAAAGUUUUUGUGGUUAGCUGGGCAAUGUUGUAACCGACUGAUUGCAUUGUUCCU
-...((((((((((...((((.((((((.(((((((((((((.....))))))))))))))))))).))))...)))..)))))))........ ( -34.00)
>DroMoj_CAF1 99896 90 + 1
----UGCAGUUGAGCUAACGAAGUCGUUUCAGCUGGCCCUAAAGUUUUUGUGGUUAGCAGCGCGAUGUUGUUGCCGCUUGAUUGCAUUGCAUUU
----((((((..(((((((((.(((((....(((((((.(((.....))).)))))))...))))).))))))..)))..))))))........ ( -33.50)
>DroPer_CAF1 81634 94 + 1
CUGCUGAAUUUUCGCUAACGAAGUUGUUUCUGUUGGCCGCAAAGUUUUUGUGGUUAACUGAGCAAUGUUGUUACCGGCUGAUUGCUUUGUUGUU
..((..((((.(((.((((((.(((((((..(((((((((((.....))))))))))).))))))).)))))).)))..))))))......... ( -28.70)
>consensus
____UGCAGUUGCGCUAACGAAGUUGUUUCAGUUGGCCGCAAAGUUUUUGUGGUUAACUGGGCAAUGUUGUUGCCGGCUGAUUGCAUUGUUGCU
....(((((((....((((((.(((((((..(((((((((((.....))))))))))).))))))).))))))......)))))))........ (-23.62 = -24.15 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:37 2006