| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,945,518 – 8,945,621 |
| Length | 103 |
| Max. P | 0.640731 |
| Location | 8,945,518 – 8,945,621 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.13 |
| Mean single sequence MFE | -31.55 |
| Consensus MFE | -19.77 |
| Energy contribution | -19.88 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.640731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8945518 103 + 27905053 ------GAUGGAGCAAUGUGUCCCUAGAGUGCACUACGCUGCGUAUACGUAAUGUGGCCGUGCUUUUUG--------GCGGCGCUGCAUUAAAAAUGAAUGCAAUUUAAAGUUGCCA ------....(.((((((((((((.((((..(.(((((.((((....)))).)))))..)..))))..)--------).)))))((((((.......)))))).......)))))). ( -33.90) >DroPse_CAF1 72587 109 + 1 AGCUGAAAUUAAGCAAUGUGUCCCCAGAGUGCACUACGUUGCGUAUACGUAAUGUGCCAGUGCUUUUUG--------GCACCGCUGCAUUAAAAAUGAAUGCAAUUUAAAGCAAAAG .(((.(((((.(((...(((...((((((.(((((((((((((....))))))))...))))).)))))--------)))).)))(((((.......))))))))))..)))..... ( -32.70) >DroGri_CAF1 75844 115 + 1 --GAGAAAUUAAGCAAUGUGUCCCAAUGGAACACUACGUUGCGUAUACGUAAUGCGUCGUUGCUUUUGGCUUCGCUGCCAGCGCUGCAUUAAAUAUGAAUGCAAUUUAAAGUUGAGU --........(((((((((((((....)).))))..(((((((....)))))))....)))))))(..(((((((.....))).((((((.......)))))).....))))..).. ( -29.40) >DroWil_CAF1 70533 109 + 1 GGCAGAAAUUAAGCAAUGUGUCCCAUGAGUGCACUACGUUGCGUAUACGUAAUGUGUCCAUGCUCUUUG--------GUGCUGCUGCAUUAAAAAUGAAUGCAAUUUAAAGUUGACU (((..(((((.((((....(..(((.(((.(((.(((((((((....)))))))))....))).)))))--------)..)))))(((((.......))))))))))...))).... ( -26.60) >DroAna_CAF1 73511 109 + 1 GGCUGAAAUUAAGCAAUGUGUCCCUAGAGUGCACUACGUUGCGUAUACGUAAUGUGGCCGUGCUUUUUG--------GCUGCGGUGCAUUAAAAAUGAAUGCAAUUUAAAGUUGCCA (((.((..(((((...((((.((..((((..(.((((((((((....))))))))))..)..))))..)--------).)))).((((((.......)))))).)))))..))))). ( -33.60) >DroPer_CAF1 74233 109 + 1 AGCUGAAAUUAAGCAAUGUGUCCCCAGAGUGCACUACAUUGCGUAUACGUAAUGUGCCAGUGCUUUUUG--------GCACCGCUGCAUUAAAAAUGAAUGCAAUUUAAAGCAAAAG .(((.(((((.(((...(((...((((((.(((((((((((((....))))))))...))))).)))))--------)))).)))(((((.......))))))))))..)))..... ( -33.10) >consensus _GCUGAAAUUAAGCAAUGUGUCCCAAGAGUGCACUACGUUGCGUAUACGUAAUGUGCCCGUGCUUUUUG________GCACCGCUGCAUUAAAAAUGAAUGCAAUUUAAAGUUGACA ..........(((((..((((.(.....).))))(((((((((....)))))))))....)))))...................((((((.......)))))).............. (-19.77 = -19.88 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:33 2006