| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,943,913 – 8,944,012 |
| Length | 99 |
| Max. P | 0.716699 |
| Location | 8,943,913 – 8,944,012 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 67.82 |
| Mean single sequence MFE | -29.06 |
| Consensus MFE | -8.35 |
| Energy contribution | -11.16 |
| Covariance contribution | 2.81 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.29 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8943913 99 + 27905053 UUCUA----UAGGUACAUAUA----UGUAUGUAUAUGUAUGUAGUGAACCGAGAGCUCUGGAUCUGGAUCUGGAUG------CGGAUGGUCCGGUGAUGACACUUACUCAAUU .....----((.(((((((((----(....)))))))))).))(((.((((.((.(((((.((((......)))).------)))).).)))))).....))).......... ( -29.60) >DroSec_CAF1 65523 101 + 1 UUCUA----UAGGUACAUACA----UAUAUGUAUAU----GUAGUGAACUGAGAGUUCUGGAUCUGGAUCUGGAUGCGGAUGCGGAUGGUCCGGUGAUGACACUUACUCAAUU ..(((----((.(((((((..----..))))))).)----))))(((..((((.((((((((((((.(((((....))))).))))...)))))....))).)))).)))... ( -28.10) >DroSim_CAF1 66934 101 + 1 UUCUA----UAGGUACAUACA----UAUAUGUAUAU----GUAGUGAACCGAGAGUUCUGGAUCUGGAUCUGGAUGCGGAUGCGGAUGGUCCGGUGAUGACACUUACUCAAUU .....----..(((.((((((----(((....))))----)).))).)))..((((...(((((((.(((((....))))).))))...)))((((....)))).)))).... ( -28.20) >DroYak_CAF1 72233 99 + 1 UCCUA----UAUG------UACGAAAACAUGUACAU----GUAGUGAACCGAGAGUUUUGGAGCUGGAUCUGGAUGCGGAUGCGGAUGGUCCGGUGAUGACACUUACUCAAUU (((((----((((------((((......)))))))----)))).))...((((((.(((..((((((((....(((....)))...))))))))..))).)))..))).... ( -32.30) >DroMoj_CAF1 88144 91 + 1 GCAUAUAUAUAUACGAGUCUG----UGUGUGUGUGUGUGUGU--------------AAAGGA---UGGCAAGGAUAC-CAUUCAGCAAGUCCGGCUAGCAUACUUACUCAAUU (((((((((((((((....))----)))))))))))))(.((--------------((.(((---(((........)-))))).((.((.....)).))....)))).).... ( -27.10) >consensus UUCUA____UAGGUACAUAUA____UAUAUGUAUAU____GUAGUGAACCGAGAGUUCUGGAUCUGGAUCUGGAUGCGGAUGCGGAUGGUCCGGUGAUGACACUUACUCAAUU ............((((((((......))))))))..................((((..((...(((((((....(((....)))...)))))))......))...)))).... ( -8.35 = -11.16 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:32 2006