Locus 3327

Sequence ID 3R_DroMel_CAF1
Location 8,938,593 – 8,938,692
Length 99
Max. P 0.980299
window5362

overview

Window 2

Location 8,938,593 – 8,938,692
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 90.77
Mean single sequence MFE -30.47
Consensus MFE -27.52
Energy contribution -28.88
Covariance contribution 1.36
Combinations/Pair 1.09
Mean z-score -2.05
Structure conservation index 0.90
SVM decision value 1.86
SVM RNA-class probability 0.980299
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8938593 99 - 27905053
UGCUUAUUUGUGGUCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCGCCCAGCCAAUAAAUUGACUGACUUGCCCAUGGCCACGCCCCCA
.........(((((((((...(((((((((((((.(((....)))...))))))))))(((.(((....))).)))...))).)))))))))....... ( -34.80)
>DroPse_CAF1 64495 95 - 1
UGCUUAUUUGU--UCGUGUUCGUAGGCGAUAGUGCAACUUAUGCUUUUCGCUGUCGCCCAGCCAAUAAAUUCACUGACACACUC--UGCAACUCUCUCU
(((.....(((--(.(((....((((((((((((.((........)).)))))))))).......))....))).)))).....--.)))......... ( -20.81)
>DroSec_CAF1 60083 99 - 1
UGCUUAUUUGUGGUCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCGCCCAGCCAAUAAAUUGACUGACAUGCCCAUGGCCACGCCCCCA
.........(((((((((..(((.((((((((((.(((....)))...))))))))))(((.(((....))).))))))....)))))))))....... ( -35.40)
>DroSim_CAF1 61490 99 - 1
UGCUUAUUUGUGGUCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCGCCCAGCCAAUAAAUUGACUGACAUGCCCAUGGCCACGCCCCCA
.........(((((((((..(((.((((((((((.(((....)))...))))))))))(((.(((....))).))))))....)))))))))....... ( -35.40)
>DroEre_CAF1 66769 98 - 1
UGCUUAUUUGUGGCCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCCUCCAGCCAAUAAAUUGACUGACAUGCCCCUGGCCACGCCCGC-
.........(((((((.((.(((.((.(((((((.(((....)))...))))))))).(((.(((....))).)))))).))...)))))))......- ( -27.90)
>DroYak_CAF1 66752 98 - 1
UGCUUAUUUGUGGUCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCCUCCAGCCAAUAAAUUGACUGACAUGCCCAUGGCCACGCCCGC-
.........(((((((((......((((((((((.(((....)))...)))))))...(((.(((....))).)))....))))))))))))......- ( -28.50)
>consensus
UGCUUAUUUGUGGUCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCGCCCAGCCAAUAAAUUGACUGACAUGCCCAUGGCCACGCCCCCA
.........((((((((((.(((.((((((((((.(((....)))...))))))))))(((.(((....))).)))))).))..))))))))....... (-27.52 = -28.88 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:29 2006