Locus 3325

Sequence ID 3R_DroMel_CAF1
Location 8,928,790 – 8,928,887
Length 97
Max. P 0.702273
window5359

overview

Window 9

Location 8,928,790 – 8,928,887
Length 97
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 79.26
Mean single sequence MFE -20.34
Consensus MFE -11.64
Energy contribution -11.86
Covariance contribution 0.22
Combinations/Pair 1.25
Mean z-score -1.87
Structure conservation index 0.57
SVM decision value 0.35
SVM RNA-class probability 0.702273
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8928790 97 + 27905053
GGGCGCAAUUACAUUUUAUCAUUUAUUCAACAUGCGCUCAGGCUCGGCGCGAAGACAAUCU-CCAUCUUCUUGUUCCCCGAUCCCCUGUCCCCAA----------CCC
(((((((.........................))))))).((.((((((.(((((......-...))))).))....)))).))...........----------... ( -18.91)
>DroSec_CAF1 50411 97 + 1
GGGCGCAAUUACAUUUUAUCAUUUAUUCAACAUGCGCUCAGGCUCGGCGGGAAGACAAUCC-CCAUCUUCCUGUUCUCCGAUCCCCUAUCCCCAA----------CCC
(((((((.........................))))))).((.((((((((((((......-...))))))))....)))).))...........----------... ( -25.41)
>DroSim_CAF1 51737 97 + 1
GGGCGCAAUUACAUUUUAUCAUUUAUUCAACAUGCGCUCAGGCUCGGCGCGAAGACAAUCC-CCAUCUUCCUGUUCUCCGAUCCCCUAUCCCCAA----------CCC
(((((((.........................))))))).((.((((((.(((((......-...))))).))....)))).))...........----------... ( -18.91)
>DroEre_CAF1 56876 84 + 1
GGGCGCAAUUACAUUCUAUCAUUUAUUCAACAUGCGCUCAGGCUCGGUGCGAAGGCAAUCC-CCAUCUUCCUGUUCCCGAUUCCC-----------------------
(((((((.........................))))))).((.(((((((....)))....-.((......))...))))..)).----------------------- ( -17.51)
>DroYak_CAF1 57051 97 + 1
GGGCGCAAUUACAUUUUAUCAUUUAUUCACCAUGCGCUCAGGCUCGGCGCGAAGGCGAUUC-CCAUCUUCCUGUUCCCGAUUCCCCAACCGCUGA----------ACC
(((((((.........................))))))).((.((((((.(..((.((.((-....(.....).....)).)).))..)))))))----------.)) ( -23.11)
>DroAna_CAF1 55921 103 + 1
GGGCGCAAUUACAUUUUAUCAUUUAUUCAACAUGCGCCCAGACCCGACGCGAAGACAAUCUUCCAUCGCCAAAGCCCCCCA-----UACCCCCAACAACAUUAAACCC
(((((((.........................))))))).....(((.(.((((.....))))).))).............-----...................... ( -18.21)
>consensus
GGGCGCAAUUACAUUUUAUCAUUUAUUCAACAUGCGCUCAGGCUCGGCGCGAAGACAAUCC_CCAUCUUCCUGUUCCCCGAUCCCCUAUCCCCAA__________CCC
(((((((.........................)))))))......((((.(((((..........))))).))))................................. (-11.64 = -11.86 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:26 2006