Locus 3323

Sequence ID 3R_DroMel_CAF1
Location 8,924,826 – 8,924,930
Length 104
Max. P 0.998658
window5357

overview

Window 7

Location 8,924,826 – 8,924,930
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 93.46
Mean single sequence MFE -39.70
Consensus MFE -35.18
Energy contribution -36.06
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -2.27
Structure conservation index 0.89
SVM decision value 3.18
SVM RNA-class probability 0.998658
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8924826 104 - 27905053
GGAGCUUGGCUUGAGUACUGGGAGCCCAGUGCCAAGAGCCAGGCACCCAGUUUAAUCCAAGGCAAUCGUCGAGCGGCAUAAGAGUGCCCCCAAAAGUGCACUUA
((.(((((((((..(((((((....)))))))...))))))))).))...........((((((......(.(.(((((....)))))))......))).))). ( -40.90)
>DroSec_CAF1 46473 104 - 1
GGAGCUUGGCUUGAGUACUGGGAGCCCAGUGCCAAGAGCCAGGCACCCAGCUUAAUCCAAGGCAAUCGUCGAGCGGCAUAAGAGUGCCCCCAAAAGUGCACUUA
((.(((((((((..(((((((....)))))))...))))))))).))..((((......))))....(((....)))....((((((.(......).)))))). ( -42.80)
>DroSim_CAF1 47781 104 - 1
GGAGCUUGGCUUGAGUACUGGGAGCCCAGUGCCAAGAGCCAGGCACCCAGCUUAAUCCAAGGCAAUCGUCGAGCGGCAUAAGAGUGCCCCCAAAAGUGCACUUA
((.(((((((((..(((((((....)))))))...))))))))).))..((((......))))....(((....)))....((((((.(......).)))))). ( -42.80)
>DroEre_CAF1 52760 103 - 1
GGAGCUGGGCUUGAGUACUGGGAGCCCAGUGCCAAGAACCGGGUACCCAACUUAAUCCAUGGCAAUCGUCGAGCGGCACUCU-UAGCCCCCAAAAGUGCACUUA
((.((((((.((((((..((((.((((.((.......)).)))).))))))))))))).((((....)))))))(((.....-..))).))............. ( -32.30)
>DroYak_CAF1 53108 104 - 1
GGAGCUUGGCUUGAGUACUGGGAGCCCAGUGCCAGGAGGCAGGCACCCAGCUUAAUCCGAGGCAAUCGUCGAGCGGCAUAAGAGUGCCCCCAAAAGUGCACUUA
((.((((((((((((..(((((.(((...((((....))))))).))))))))))...((.....)))))))))(((((....))))).))............. ( -39.70)
>consensus
GGAGCUUGGCUUGAGUACUGGGAGCCCAGUGCCAAGAGCCAGGCACCCAGCUUAAUCCAAGGCAAUCGUCGAGCGGCAUAAGAGUGCCCCCAAAAGUGCACUUA
((.(((((((((..(((((((....)))))))...))))))))).))...........((((((......(.(.(((((....)))))))......))).))). (-35.18 = -36.06 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:24 2006