Locus 3322

Sequence ID 3R_DroMel_CAF1
Location 8,923,442 – 8,923,541
Length 99
Max. P 0.746770
window5356

overview

Window 6

Location 8,923,442 – 8,923,541
Length 99
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 89.64
Mean single sequence MFE -21.42
Consensus MFE -16.52
Energy contribution -16.52
Covariance contribution -0.00
Combinations/Pair 1.08
Mean z-score -1.74
Structure conservation index 0.77
SVM decision value 0.46
SVM RNA-class probability 0.746770
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8923442 99 + 27905053
AGUACACGUACACAGCAUUGAUACAGAAAUCAAUCGCUGAAGUCUGCGAAUGAUCAGGAAUUUGCAAAAGUACAAGGAUCCC--CUAUAAGGCACAAAUUU
.((....((((.((((((((((......)))))).)))).....(((((((........)))))))...)))).(((....)--)).....))........ ( -23.80)
>DroSec_CAF1 45098 100 + 1
AGUACACGUACACAGCAUUGAUACAGAAAUCAAUCGCUGAAGUCUGCGAAUGAUCAGAAAUUUGCAAA-GGACAAGGAUCGCCUCUAUAAGGCACAAAUAU
.(((....))).((((((((((......)))))).))))..((((((((((........))))))...-)))).......((((.....))))........ ( -25.70)
>DroSim_CAF1 46381 101 + 1
AGUACACGUACACAGCAUUGAUACAGAAAUCAAUCGCUGAAGUCUGCGAAUGAUCAGGAAUUUGCAAAAGUACAAGGAUCCCCUCUAUAAGGCACAAAUUU
.((....((((.((((((((((......)))))).)))).....(((((((........)))))))...)))).(((....))).......))........ ( -23.20)
>DroEre_CAF1 51359 99 + 1
AGUACACGUACAAAGCAUUGAUACCGAAAUCAAUCGCUGAAGUCUGCGAAUGAUCAGGAAUUUGCAAAAACACAAGACUCAC--UUAUAAGGCACCUAUUC
.(((....)))..(((((((((......)))))).)))...((((((((((........))))))........(((.....)--))...))))........ ( -16.80)
>DroYak_CAF1 51648 99 + 1
AGUACACGUACAAAGCAUUGAUACCGAAAUCAAUCGCUGAAGUCUGCGAAUGCUCAGGAAUUUGCAAAAACACACGGCUCAC--UUAUAAGGCAACUAUUC
......(((....(((((((((......)))))).)))......(((((((........))))))).......)))......--.....((....)).... ( -17.60)
>consensus
AGUACACGUACACAGCAUUGAUACAGAAAUCAAUCGCUGAAGUCUGCGAAUGAUCAGGAAUUUGCAAAAGCACAAGGAUCAC__CUAUAAGGCACAAAUUU
.(((....))).((((((((((......)))))).))))..((((((((((........))))))..........((.......))...))))........ (-16.52 = -16.52 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:23 2006