Locus 3320

Sequence ID 3R_DroMel_CAF1
Location 8,920,188 – 8,920,281
Length 93
Max. P 0.500000
window5352

overview

Window 2

Location 8,920,188 – 8,920,281
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 74.66
Mean single sequence MFE -25.16
Consensus MFE -11.31
Energy contribution -13.42
Covariance contribution 2.11
Combinations/Pair 1.25
Mean z-score -1.80
Structure conservation index 0.45
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8920188 93 - 27905053
UGCUCCAUCAAUUUAUGGGCGCCUAAAGAUUUGGCCAACCAACCGACUAUGUGGCUAAGCAUCUUGUCCCAUAAACCAGGCCAAGCAAUGGAC
...(((((...((((((((.((...((((((((((((..((........)))))))))..)))))))))))))))....((...)).))))). ( -22.40)
>DroSec_CAF1 41850 83 - 1
UGCUCCAUCAAUUUAUGGGCGCCUAAAGAUUUGGCCAACCAACCGACUAUGUGGCUAAAC----------AUAAACCAGGCCAAGCACUGGCC
.((.((((......))))))(((....(.(((((((...(....)..(((((......))----------))).....))))))))...))). ( -21.50)
>DroEre_CAF1 48063 87 - 1
UGCUCCAUCAAUUUAUGGGCGCCUAAAGAUUUGGCCAACCGAC------UGGGGCUAAGCAUCUUGUCCCAUAAACCAGGCCGGGCACUGGCC
.((.((((......))))))(((....(.(((((((.......------((((((.(((...))))))))).......))))))))...))). ( -27.34)
>DroYak_CAF1 48315 89 - 1
UGCUCCAUCAAUUUAUGGGCGCCUGAAGAUUUGGCCAACCAAC----UCUGGGGCUAAGCGUCUUGUCCCAUAAACCAGGCCAAGCACUGGCC
...........((((((((.((..((.(.(((((((..(((..----..))))))))))).))..))))))))))...(((((.....))))) ( -28.90)
>DroAna_CAF1 48108 88 - 1
UGCUCUAUCAAUUUAUGGGCGCCAGAAGAUUUGCUC--CC-GGCGUCCAC-AGGGUGAACAUCUUG-CCCAUAAACCAGGCCAACUAAGGCCU
...............((((((((.(.((.....)).--).-)))))))).-.(((..(.....)..-))).......(((((......))))) ( -30.40)
>DroPer_CAF1 47168 74 - 1
UGCUCUAUCAAUUUAUGGGCGCCCAAAGAUUUGGUCCACC-----------------AGCAUCUUGG-CCAUAAACCAGGCAGAGUCA-AGCC
.(((((..(..(((((((....((((.(((((((....))-----------------)).)))))))-)))))))...)..)))))..-.... ( -20.40)
>consensus
UGCUCCAUCAAUUUAUGGGCGCCUAAAGAUUUGGCCAACCAAC____UAUGGGGCUAAGCAUCUUGUCCCAUAAACCAGGCCAAGCAAUGGCC
...........((((((((......(((((((((((................)))))))..))))..))))))))...(((((.....))))) (-11.31 = -13.42 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:20 2006