| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,917,895 – 8,917,986 |
| Length | 91 |
| Max. P | 0.956087 |
| Location | 8,917,895 – 8,917,986 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 82.63 |
| Mean single sequence MFE | -26.40 |
| Consensus MFE | -18.38 |
| Energy contribution | -19.22 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8917895 91 - 27905053 ----------GCCACAUCCACACCCACAUCCAGGCAUGUGCCAGGAACUCGGGCCUCCAGACCUCAGGACCCCAAGAGCCCAUCUCAAAGGCAAAGUUAAU ----------(((...............(((.(((....))).)))....((((((((........)))......).))))........)))......... ( -22.00) >DroSec_CAF1 39583 78 - 1 ----------GCCAC------------AUCCAGGCAUGUGCCAGGAACUCGGGCCUCCAGACCUCAGGACCCCGA-AGCCCAUCUCAAAGGCAAAGUUAAU ----------(((..------------.(((.(((....))).)))..(((((..(((........))).)))))-.............)))......... ( -23.90) >DroSim_CAF1 39733 77 - 1 ----------GCCAC------------AUCCAGGCAUGUGCCAGGAACUC--GCCUCCAGACCUCAGGACCCCGAGAGCCCAUCUCAAAGGCAAAGUUAAU ----------(((..------------.(((.(((....))).))).(((--(..(((........)))...)))).............)))......... ( -20.90) >DroEre_CAF1 45691 101 - 1 CACACCCAGACCCACAUCCACAUCCACAGCCAGGCAUGUGCCAGGAACUCGGGGCUCCAGACCUCAGGACCCCGAGAGCCCAUCUCAAAGGCAAAGUUAAU ............................(((.(((....))).((..(((((((.(((........))))))))))..)).........)))......... ( -31.70) >DroYak_CAF1 45981 95 - 1 CAC------GCCAACAUGCACACCCACAUUCAGGCAUGUGCCAGGAACUCGGGGCUCCAGACCUCAGGACCCCGAGAGCCCAUCUCAAAGGCAAAGUUAAU ...------(((.....(((((.((.......))..)))))..((..(((((((.(((........))))))))))..)).........)))......... ( -33.50) >consensus __________GCCACAU_CACA_CCACAUCCAGGCAUGUGCCAGGAACUCGGGCCUCCAGACCUCAGGACCCCGAGAGCCCAUCUCAAAGGCAAAGUUAAU ............................(((.(((....))).))).((((((..(((........))).)))))).(((.........)))......... (-18.38 = -19.22 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:19 2006