Locus 3317

Sequence ID 3R_DroMel_CAF1
Location 8,904,624 – 8,904,720
Length 96
Max. P 0.744724
window5348

overview

Window 8

Location 8,904,624 – 8,904,720
Length 96
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 75.81
Mean single sequence MFE -28.02
Consensus MFE -11.43
Energy contribution -13.10
Covariance contribution 1.67
Combinations/Pair 1.30
Mean z-score -2.19
Structure conservation index 0.41
SVM decision value 0.46
SVM RNA-class probability 0.744724
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8904624 96 - 27905053
UAUUUCAUCCC-AGGCC-AGCAACU-UGGCCAGAA-GGGUUUGGUUCGGCUCGGCUUUACAUGUUUAUGCUGCACCAGCAGCAGCAUCCAUGGCCAAAAG
....(((.(((-.((((-((....)-)))))....-)))..)))........((((....((((...((((((....))))))))))....))))..... ( -30.80)
>DroSec_CAF1 26361 96 - 1
UAUUUCAUCCC-AGGCC-AGCAACU-UGGCCAAAA-GGGUUUGGUUCGUCUCGGCUUUACAUGUUUAUGCUGCACCAGCAGCAUCAUCCAUGGCCAAAAG
........(((-.((((-((....)-)))))....-)))((((((..((....))....((((..((((((((....))))))).)..)))))))))).. ( -31.90)
>DroSim_CAF1 26431 96 - 1
UAUUUCAUCCC-AGGCC-AGCAACU-UGGCCAGAA-GGGUUUGGUUCGUCUCGGCUUUACAUGUUUAUGCUGCACCAGCAGCAUCAUCCAUGGCCAAAAG
........(((-.((((-((....)-)))))....-)))((((((..((....))....((((..((((((((....))))))).)..)))))))))).. ( -31.90)
>DroEre_CAF1 27199 76 - 1
UAUUUCAGGCC-AGGCC-AACAACU-UGGCCAGAA-GCGUUUGGUUCGCCUCGGCUUCACAUGUUUAUGCUGCACCAGCA--------------------
......(((((-.((((-((....)-))))).((.-(((.......))).)))))))..........(((((...)))))-------------------- ( -24.60)
>DroYak_CAF1 27651 93 - 1
UAUUUCAUCCC-AGACC-AACAACU-UGGCCAGAA-GCGUUUGGUUCGCCCCGGCUUCACAUGUUUAUGCUGCACCAGCAGCCACA---AUGGCCAAAAG
...........-.....-......(-(((((((((-((....((....))...)))))...(((....(((((....))))).)))---.)))))))... ( -27.20)
>DroAna_CAF1 29062 96 - 1
C-CUUCAUCCUUCGGCCGACUAACUAUAGCUUCAAUAGCUUCAGUUAGACUCU-CGUUGCAUGUUUAUGUUGUAGGAGCAGCAACAUUUAAAGAA--AAA
.-........(((......((((((..((((.....))))..)))))).....-.(((((.(((((.........)))))))))).......)))--... ( -21.70)
>consensus
UAUUUCAUCCC_AGGCC_AGCAACU_UGGCCAGAA_GGGUUUGGUUCGCCUCGGCUUUACAUGUUUAUGCUGCACCAGCAGCAACAUCCAUGGCCAAAAG
...........................(((((((.....)))))))......((((....(((....((((((....)))))).)))....))))..... (-11.43 = -13.10 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:16 2006