| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,901,444 – 8,901,536 |
| Length | 92 |
| Max. P | 0.650275 |
| Location | 8,901,444 – 8,901,536 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 74.00 |
| Mean single sequence MFE | -15.72 |
| Consensus MFE | -12.44 |
| Energy contribution | -12.17 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.63 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8901444 92 - 27905053 CU---CAGCACUCACUCACACACUCACACACACGCACAGGGACAAAGG-A--AAAUCAAGCUCAAGAGGGAAAUGAUUUGUUUUUCCUUUUGUCAUGU ..---..............................(((..((((((((-(--(((.((((.(((.........))))))).)))))).)))))).))) ( -16.70) >DroPse_CAF1 25116 86 - 1 CUCUCCGACACCAAC----------ACGAACACACACGCAGACAAAGGCA--AAAUCAAGCUCAAGAGGGAAAUGAUUUGUUUUUCUUUUUGUCAUGU ...............----------............((((((((((((.--.......)))...(((..((((.....))))..))))))))).))) ( -13.50) >DroEre_CAF1 23696 90 - 1 CU---CGACACUCACACACACAC--ACACACGCUUGCAGUGACAAAGG-A--AAAUCAAGCUCAAGAGGGAAAUGAUUUGUUUUUCCUUUUGUCAUGU ..---..................--.............((((((((((-(--(((.((((.(((.........))))))).)))))).)))))))).. ( -17.80) >DroYak_CAF1 23977 86 - 1 -------ACACUUACAGAACAAG--AGACACACACACAGUGACAAAGA-A--GAAUCAAGCUCAAGAGGGAAAUGAUUUGUUUUUCCUUUUGUCAUGU -------......(((..(((((--((...(((.....)))..(((((-.--((((((..(((....)))...)))))).))))).)))))))..))) ( -18.00) >DroAna_CAF1 22730 83 - 1 CU---UCGUCCUUCCUUCC---UUUC--------CACACAGACAAAGG-AAAAAAUCAAGCUUAAGAGGGAAAUGAUUUGUUUUUCUUUUUGUCAUGU ..---..............---....--------...(((((((((((-(((((((((..(((....)))...))))...)))))).))))))).))) ( -12.80) >DroPer_CAF1 27125 86 - 1 CGGUCCGACACCAAC----------ACCAACACACACGCAGACAAAGGCA--AAAUCAAGCUCAAGAGGGAAAUGAUUUGUUUUUCUUUUUGUCAUGU .(((.....)))...----------............((((((((((((.--.......)))...(((..((((.....))))..))))))))).))) ( -15.50) >consensus CU___CGACACUAAC__AC______ACACACACACACACAGACAAAGG_A__AAAUCAAGCUCAAGAGGGAAAUGAUUUGUUUUUCCUUUUGUCAUGU ........................................((((((((....((((((..(((....)))...)))))).......)))))))).... (-12.44 = -12.17 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:14 2006