Locus 3314

Sequence ID 3R_DroMel_CAF1
Location 8,898,345 – 8,898,435
Length 90
Max. P 0.530455
window5345

overview

Window 5

Location 8,898,345 – 8,898,435
Length 90
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 84.04
Mean single sequence MFE -20.60
Consensus MFE -16.72
Energy contribution -17.80
Covariance contribution 1.08
Combinations/Pair 1.09
Mean z-score -1.48
Structure conservation index 0.81
SVM decision value -0.01
SVM RNA-class probability 0.530455
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8898345 90 + 27905053
-------UUACUAAAAAUGCUUUUUGGUUAUUUCGAUUUUUGCAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC
-------..............((((((((((.((..........)).)))))))))).(((((((.(........)..(((....)))))))))).. ( -23.20)
>DroSim_CAF1 20157 90 + 1
-------UUACUGAAAAUGCUUUUUGGUUAUUUCGAUUUUUACAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC
-------..............((((((((((.((..........)).)))))))))).(((((((.(........)..(((....)))))))))).. ( -23.20)
>DroEre_CAF1 20473 90 + 1
-------UUACUGAAUAUGCUUUUUGGUUAUUUCGACUUUUGCAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC
-------..............((((((((((.((..(....)..)).)))))))))).(((((((.(........)..(((....)))))))))).. ( -24.30)
>DroYak_CAF1 20787 90 + 1
-------UUACUGAACAUGCUGUUUCGUUAUUUCGGUUUUUGCAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC
-------..............((((.(((((.((.((....)).)).)))))..))))(((((((.(........)..(((....)))))))))).. ( -19.20)
>DroMoj_CAF1 25558 95 + 1
AAUCGAUAAACUA-AAU-CAUGUUCGGCAAUUUUCCUUUUUGCAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCUGCACGCAC
....(((......-.))-).(((...((..(((((((((..(((.((...........)).)))...))))))))).((((....))))))..))). ( -18.50)
>DroAna_CAF1 19957 78 + 1
-------U-----CCAAU--UUUUUGC---UUUCCA--UUUACAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC
-------.-----.....--((((.((---(.((..--......))...))).)))).(((((((.(........)..(((....)))))))))).. ( -15.20)
>consensus
_______UUACUGAAAAUGCUUUUUGGUUAUUUCGAUUUUUGCAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC
......................(((((((((.((..........)).)))))))))..(((((((.(........)..(((....)))))))))).. (-16.72 = -17.80 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:13 2006