| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,895,830 – 8,895,921 |
| Length | 91 |
| Max. P | 0.583652 |
| Location | 8,895,830 – 8,895,921 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 80.32 |
| Mean single sequence MFE | -30.87 |
| Consensus MFE | -18.58 |
| Energy contribution | -20.97 |
| Covariance contribution | 2.39 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8895830 91 - 27905053 U-------GUCCUAUCAGGUGGGAAGCUGUGGCCGUGGCCGUGGAAAGCGGAAAA-UCGCCAUACGCUGUAAAUGUGCGUAACAUAUGCCGGGGCCACA-- .-------.((((((...))))))....((((((.((((.(((....(((.....-.)))..(((((.........))))).)))..)))).)))))).-- ( -35.40) >DroPse_CAF1 19042 85 - 1 A-------GUCCUAUCAGGUGGGAAGCUG---------CCACAGCAGGCGGAAAACUCAACAUACGUUUUCAAUGUGCGUAACAUAUGCCAUUGUAACACU .-------.((((((...))))))..(((---------((......)))))..............(((..(((((.(((((...)))))))))).)))... ( -22.20) >DroSec_CAF1 17607 91 - 1 U-------GUCCUAUCAGGUGGGAAGCUGUGGCCGUGGCCGUGGAAAGCGGAAAA-UCGCCAUACGCUGUAAAUGUGCGUAACAUAUGCCGGGGCCACA-- .-------.((((((...))))))....((((((.((((.(((....(((.....-.)))..(((((.........))))).)))..)))).)))))).-- ( -35.40) >DroEre_CAF1 17910 91 - 1 U-------GUCCUAUCAGGUGGGAAGCUGUGGCCGUGGCCGUGGCAAGCGGAAAA-UCGCCAUACGCUGUAAAUGUGCGUCACAUAUGCCGGGGCCACG-- .-------.((((((...))))))....((((((.((((.(((((.((((.....-........))))(((....))))))))....)))).)))))).-- ( -35.92) >DroYak_CAF1 18174 98 - 1 UUCCUUCAGUGCUAUCAGGUGGGAAGCUGUGGCCGUGGCCGUGGAAAGCGGAAAA-UCGCCAUACGCUGUAAAUGUGCGUAACAUAUGCCGGGGCCACU-- ...((((..((((....)))).))))..((((((.((((.(((....(((.....-.)))..(((((.........))))).)))..)))).)))))).-- ( -34.10) >DroPer_CAF1 21175 85 - 1 A-------GUCCUAUCAGGUGGGAAGCUG---------CCACAGCAGGCGGAAAACUCAACAUACGUUUUCAAUGUGCGUAACAUAUGCCAUUGUAACACU .-------.((((((...))))))..(((---------((......)))))..............(((..(((((.(((((...)))))))))).)))... ( -22.20) >consensus U_______GUCCUAUCAGGUGGGAAGCUGUGGCCGUGGCCGUGGAAAGCGGAAAA_UCGCCAUACGCUGUAAAUGUGCGUAACAUAUGCCGGGGCCACA__ .........((((((...))))))....((((((.((((.......((((..............))))....((((.....))))..)))).))))))... (-18.58 = -20.97 + 2.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:09 2006