| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,878,118 – 8,878,220 |
| Length | 102 |
| Max. P | 0.898728 |
| Location | 8,878,118 – 8,878,220 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.01 |
| Mean single sequence MFE | -31.52 |
| Consensus MFE | -25.21 |
| Energy contribution | -25.93 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8878118 102 + 27905053 CAG-UGUGCAGUCAUGUCGCAUCACUACGUGGUGACGGCGCAAAAGCCGACGGCCGUUGUUGCCUGCCUAACAGGUAAGAACAAGAGAGCGUGUGAAAGAGAG ..(-((.(((....)))))).((((.(((((((..((((......))))...)))(((.(((((((.....))))))).)))......))))))))....... ( -35.50) >DroSec_CAF1 1 88 + 1 -------------AUGUCGCAUCACUACGUGGUGACGGCGCAAAAGCCGACGGCGGUUGUUGCCUGCCUAACAGGUAAGAACAAG--AGCGUGUGAAAGAGAG -------------.(.((...((((.(((((.((.((((......)))).)).).(((.(((((((.....))))))).)))...--.))))))))..)).). ( -31.30) >DroSim_CAF1 19 100 + 1 CAG-UUUGCAGUCAUGUCGCAUCACUACGUGGUGACGGCGCAAAAGCCGACGGCGGUUGUUGCCUGCCUAACAGGUAAGAACAAG--AGCGUGUGAAAGAGAG ...-((..(((((..((((((((((...)))))).))))((....)).))).((.(((.(((((((.....))))))).)))...--.)).))..))...... ( -33.80) >DroEre_CAF1 35 89 + 1 CA--------GACAUGUCGCAUCACUACGUGGUGACGGCGCAGAAGCCGACGGCGGUUGUUGCCUGUUUAACAGGUAAGAACAAG--AGU--GAGGAAUAG-- ..--------((....))...(((((.(((.((..((((......)))))).)))(((.(((((((.....))))))).)))...--)))--)).......-- ( -31.50) >DroYak_CAF1 19 96 + 1 CAG-CGUGCAGCCAUGUCGCAUCACUACGUGGUGACGGCGCAGAAGCCGACGGCGGUUGUUGCCUGUUUGACAGGUAAGAACAAG--AGA--GGGGAAAGG-- ...-.......((.(((((((((((...)))))).((((......)))).)))))(((.(((((((.....))))))).)))...--...--)).......-- ( -32.60) >DroPer_CAF1 2156 91 + 1 GACUUCUGAGAAAAUGUCGCAUCACUAUGUGGUGACAGCGCAAAAGCCCACUGCGGUUGUAGCCUGUUUAACCGGUAAGGGGAAA--CGA--G------GG-- ..((((........((.(((.(((((....)))))..)))))....(((.((.((((((.........))))))...)))))...--.))--)------).-- ( -24.40) >consensus CAG_U_UGCAGACAUGUCGCAUCACUACGUGGUGACGGCGCAAAAGCCGACGGCGGUUGUUGCCUGCCUAACAGGUAAGAACAAG__AGC__GUGAAAGAG__ ...............((((((((((...)))))).((((......)))).)))).(((.(((((((.....))))))).)))..................... (-25.21 = -25.93 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:07 2006