Locus 331

Sequence ID 3R_DroMel_CAF1
Location 1,261,533 – 1,261,633
Length 100
Max. P 0.610031
window555

overview

Window 5

Location 1,261,533 – 1,261,633
Length 100
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 85.63
Mean single sequence MFE -21.67
Consensus MFE -15.12
Energy contribution -15.23
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -2.09
Structure conservation index 0.70
SVM decision value 0.16
SVM RNA-class probability 0.610031
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1261533 100 + 27905053
-----CUGACAGUUGAGUGCGACACAGUAC----AUAUAAAUUUAAGAAAAUUUAAAUCCAUAUAAAUAUACUCGAAAUUGCACAUAGGGUAUCAACCAUUCGACUCAC
-----.....((((((((((((..(((((.----((((..(((((((....)))))))..)))).....)))).)...))))))....(((....)))..))))))... ( -16.20)
>DroSec_CAF1 38354 109 + 1
AAUUACUGACAGUUGAGUGGGACACAGCACCAUCCUGCAAUAUUUAGACAAUUUAAAUCCAUAGAGAUAUACUCUGAAUUGCACAUAAGGUAUCAACCAUUCGACUCAC
..........((((((((((........(((....(((((((((((((...)))))))...(((((.....))))).)))))).....))).....))))))))))... ( -23.62)
>DroSim_CAF1 33016 109 + 1
AAUUACUGACAGUUGAGUGGGACACAGCACCAACCUGCAAUAUUUAGACAAUUUAAAUCCAUAGAGAUAUACUCUGAAUUGCACAUAGGGUAUCAACCAUUCGACUCAC
..........((((((((((......((.((....(((((((((((((...)))))))...(((((.....))))).))))))....)))).....))))))))))... ( -25.20)
>consensus
AAUUACUGACAGUUGAGUGGGACACAGCACCA_CCUGCAAUAUUUAGACAAUUUAAAUCCAUAGAGAUAUACUCUGAAUUGCACAUAGGGUAUCAACCAUUCGACUCAC
..........((((((((((......(((......)))..............................((((((((.........))))))))...))))))))))... (-15.12 = -15.23 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:36 2006