| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,876,826 – 8,876,932 |
| Length | 106 |
| Max. P | 0.732871 |
| Location | 8,876,826 – 8,876,932 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.97 |
| Mean single sequence MFE | -35.03 |
| Consensus MFE | -23.54 |
| Energy contribution | -22.60 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8876826 106 + 27905053 A---CCUGA----UUUAUUUACCUGACAGUAGGUGGGGCUCUCGGGAUCCACGUCGACUGUGGACAGAUAAUCGCCGUGCGGCUCAUCCAAGUUGGGCUGAACGGUGACCGUG .---(((((----....((((((((....))))))))....))))).((((((.....)))))).......(((((((.(((((((.......))))))).)))))))..... ( -41.10) >DroVir_CAF1 11061 113 + 1 AAUAAUAAAAUUAUUUGAAUACCUGACAAUAUGUGGGACUAUCCGGGUCCACAUCGAUUGUGGACAGAUAAUCGCCAUGCGGCUCAUCCAAGUUGGGUUGAAUUGUCACCGUA .......................(((((((..((((((.((((...(((((((.....))))))).)))).)).)))).(((((((.......))))))).)))))))..... ( -33.80) >DroGri_CAF1 9996 108 + 1 -----UGGAUUUAUUUGGUUACCUGGCAAUAUGUGGGACUAUCUGGGUCCACAUCGAUUGUGGAUAGAUAAUCGCCAUGCGGCUCGUCCAAAUUUGGUUGAAUUGUGACCGUA -----...........((((((....((((.....(((((((((..(((((((.....))))))))))))...(((....)))..)))).......))))....))))))... ( -34.10) >DroYak_CAF1 12349 99 + 1 A--------------UAUUUACCUGGCAGUAGGUGGGGCUCUCGGGAUCCACGUCGACUGUGGACAGAUAAUCGCCAUGGGGCUCAUCCAAGUUGGGCUGAACGGUGACCGUG .--------------...(((((...((((..((((..((....))..)))).((((((.((((..(.....)(((....)))...))))))))))))))...)))))..... ( -30.20) >DroMoj_CAF1 10822 108 + 1 -----CAAGUAUAUUUGCUUACCUGGCUAUAAGUGGGACUAUCAGGGUCCACAUCGAUGGUUGAUAGAUAGUCGCCAUGCGGCUCAUCCAAGUUGGGUUGAAUUGUCACCGUG -----.(((((....)))))....((((((..((((((((.....))))).)))..))))))(((((...(((((...)))))((((((.....))).))).)))))...... ( -28.90) >DroAna_CAF1 44969 103 + 1 ------AAG----UCUAUUUACCUGGCAGUAGGUGGGGCUCUCUGGAUCCACAUCGACUGUGGACAGAUAGUCGCCGUGGGGCUCAUCCAGAUUGGGCUGAACGGUGACAGUG ------.((----(((...((((((....))))))))))).((((..((((((.....))))))))))..((((((((..((((((.......))))))..)))))))).... ( -42.10) >consensus ______AAA____UUUAUUUACCUGGCAAUAGGUGGGACUAUCGGGAUCCACAUCGACUGUGGACAGAUAAUCGCCAUGCGGCUCAUCCAAGUUGGGCUGAACGGUGACCGUG ......................((((((((..((((..((....))..))))....)))))...)))....((((.((.(((((((.......))))))).)).))))..... (-23.54 = -22.60 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:06 2006