| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,846,552 – 8,846,667 |
| Length | 115 |
| Max. P | 0.752624 |
| Location | 8,846,552 – 8,846,667 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.05 |
| Mean single sequence MFE | -40.92 |
| Consensus MFE | -30.59 |
| Energy contribution | -29.52 |
| Covariance contribution | -1.07 |
| Combinations/Pair | 1.48 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.752624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8846552 115 + 27905053 AUCUGCUUGUUUUCUCA-----ACGCAGGGCUGUGCACGCAUCCGCGGCGACACCUUGGGUCUGGUGGGACUGGGCCGCAUUGGUAGCGCCGUGGCCCUGCGGGCUAAGGCGUUCGGCUU ..(((..((((((....-----.(((((((((((....)))..(((((((..(((.((((((..(.....)..)))).))..)))..)))))))))))))))....))))))..)))... ( -52.80) >DroPse_CAF1 20972 120 + 1 AGAUCUUUAAUCUCUCUCUUUUUCGCAGGGCUGUGCCCGCAUACGCGGCGAUACCUUAGGCCUAGUCGGACUGGGUCGCAUUGGCAGCGCCGUGGCCUUGAGAGCAAAAGCAUUUGGCUU ((((((((...(((((........((.((((...))))))...(((((((...((...(((((((.....))))))).....))...))))))).....)))))..)))).))))..... ( -43.50) >DroGri_CAF1 19970 102 + 1 ----------------UCAUU--UACAGGGUUGCGCACGCAUUCGUGGCGAUACCUUAGGAUUAGUUGGACUGGGUCGCAUUGGCAGCGCUGUUGCGUUGAGAGCAAAAGCAUUUGGCUU ----------------.....--.((((.(((((.((((....))))((((...(((((..(.....)..)))))))))....))))).))))...((..((.((....)).))..)).. ( -30.60) >DroWil_CAF1 19300 110 + 1 ACCU-----UUAUCUGU-----AUUUAGGGCUGUGCACGCAUACGAGGCGAUACUCUUGGCUUAGUUGGACUAGGUCGCAUUGGCAGCGCUGUGGCCUUGAGAGCAAAAGCAUUCGGCUU ....-----.....(((-----.(((((((((..((((((....(((......)))..(((((((.....)))))))((....)).))).)))))))))))).))).((((.....)))) ( -33.90) >DroAna_CAF1 18499 104 + 1 -----UUAACUUUCU-----------AGGGCUGUGCACGCAUCCGCGGCGAUACGUUGGGCCUGGUGGGACUGGGCCGAAUCGGAAGUGCCGUGGCAUUGAGAGCAAAGGCGUUCGGCUU -----..........-----------.((((((...((((..((((((((...((((.((((..(.....)..)))).)).))....))))))))..(((....)))..)))).)))))) ( -41.20) >DroPer_CAF1 20947 120 + 1 AGAUCUUUAAUCUCUCUCUUUUCCGCAGGGCUGUGCCCGCAUACGCGGCGAUACCUUAGGCCUAGUCGGACUGGGUCGCAUUGGCAGCGCCGUGGCCUUGAGAGCAAAAGCAUUUGGCUU ((((((((...(((((........((.((((...))))))...(((((((...((...(((((((.....))))))).....))...))))))).....)))))..)))).))))..... ( -43.50) >consensus A__U_UUUAAUCUCUCU______CGCAGGGCUGUGCACGCAUACGCGGCGAUACCUUAGGCCUAGUCGGACUGGGUCGCAUUGGCAGCGCCGUGGCCUUGAGAGCAAAAGCAUUCGGCUU .........................(((((((((....)))..(((((((...((...(((((((.....))))))).....))...))))))))))))).......((((.....)))) (-30.59 = -29.52 + -1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:00 2006