| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,845,334 – 8,845,435 |
| Length | 101 |
| Max. P | 0.697405 |
| Location | 8,845,334 – 8,845,435 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.07 |
| Mean single sequence MFE | -33.67 |
| Consensus MFE | -23.54 |
| Energy contribution | -23.93 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8845334 101 + 27905053 C------AG----CGA---------AAUGGACAAAAAUCUGAUGAUGCCGAAGCGUUCGCGCAUCGAUGUCAAGGGCAACUUUGCCAACGGACCGCUGCAAGCACGCCCACUGGUGGCCC (------((----((.---------.................(((((((((.....))).))))))..(((...((((....))))....))))))))...((.((((....)))))).. ( -31.90) >DroVir_CAF1 20569 107 + 1 C------AA----CAAAU--UUAA-UAUGGAUAAAAAUCUUAUGAUGCCGAAGCGUUCGCGCAUAGAUGUUAAAGGCAGCUUUGCCAAUGGUCCGCUGCAGGCGCGACCGUUGGUGGCGC .------..----....(--((((-(((((((....))))....(((((((.....))).))))..))))))))....((.(..((((((((((((.....))).)))))))))..).)) ( -35.50) >DroPse_CAF1 20319 101 + 1 C------AA----CAA---------AAUGGACAAGAAUCUGAUGAUGCCGAAGCGCUCGCGCAUUGACGUUAAAGGCACCUUCGCCAACGGGCCACUGCAGGCGCGUCCGCUGGUGGCCC .------..----...---------..(((..(((...((..(((((.(((.(((....))).))).)))))..))...)))..)))..((((((((...((((....)))))))))))) ( -33.40) >DroGri_CAF1 19293 110 + 1 G------AA----CAAAAGGUAAAAAAUGGAUAAAAAUCUUAUGAUGCCGAAGCGUUCGCGCAUUGAUGUUAAAGGCAGCUUUGCCAAUGGUCCGCUGCAGGCGCGACCGCUGGUUGCGC (------((----(....((((......((((....)))).....)))).....))))(((((....(((.....))).....((((.((((((((.....))).))))).))))))))) ( -33.20) >DroWil_CAF1 18668 101 + 1 A------AA----CAA---------AAUGGACAAAAAUCUAAUGUUGCCGAAGCGUUCACGCAUUGAUGUUAAAGGCAGUUUUGCCAAUGGUCCGCUCCAGGCGAGACCAUUGGUAGCCC (------((----(..---------..((((......))))....((((..((((((........))))))...))))))))((((((((((((((.....))).))))))))))).... ( -33.60) >DroAna_CAF1 17869 111 + 1 CUAAUUCCGGGACAAA---------AAUGGACAAAAAUCUGAUGAUGCCGAAGCGUUCGCGCAUCGAUGUUAAGGGCAGUUUCGCCAACGGACCGCUACAGGCGCGUCCACUGGUGGCUC .....(((..((((..---------...(((......)))..(((((((((.....))).)))))).))))..))).....((((((..(((((((.....))).))))..))))))... ( -34.40) >consensus C______AA____CAA_________AAUGGACAAAAAUCUGAUGAUGCCGAAGCGUUCGCGCAUUGAUGUUAAAGGCAGCUUUGCCAACGGUCCGCUGCAGGCGCGACCACUGGUGGCCC .............................................((((..((((((........))))))...))))...((((((.((((((((.....))).))))).))))))... (-23.54 = -23.93 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:59 2006