Locus 3302

Sequence ID 3R_DroMel_CAF1
Location 8,833,567 – 8,833,680
Length 113
Max. P 0.551249
window5330

overview

Window 0

Location 8,833,567 – 8,833,680
Length 113
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 76.16
Mean single sequence MFE -45.87
Consensus MFE -24.20
Energy contribution -24.29
Covariance contribution 0.09
Combinations/Pair 1.30
Mean z-score -1.66
Structure conservation index 0.53
SVM decision value 0.04
SVM RNA-class probability 0.551249
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8833567 113 + 27905053
CCCAUUUGGCUAUGACUUCGAUCCCUCC----UCGGUGGUGCCGGGCGGAGGAUCGAAGGCGGCCAGCGUGGCCAGCGAUCUGAACGAAUUCCUGCGCCGCAGCCCGCUCAGCCAGC
.....((((((....(((((((((..((----((((.....))))).)..)))))))))((((...((((((((((.((...........))))).))))).))))))..)))))). ( -53.10)
>DroVir_CAF1 8974 98 + 1
UCCCUUUGGCUAUGACUUUGAGCC-------------------GGCGCCUGGCUCAAAGCCCGCCAGCGUCGGCAGCGAUCUGAAUGAAUUCUUGCGUCGCAGUCCGCACAGCCAGC
.....((((((..((((....(((-------------------(((((.((((.........)))))))))))).(((((..(((....)))....))))))))).....)))))). ( -38.70)
>DroGri_CAF1 8529 98 + 1
UCCCUUUGGCUAUGACUUUGAGUC-------------------GGCGGCUGGCUCAAAGCCGGCCAGCGUUGCCAGUGAUCUGAAUGAGUACUUGCGCCGCAGCCCGCACAGCCAGC
.....((((((..(((.....)))-------------------((((((((((.....))))))).(((.(((.((((.((.....)).)))).))).))).))).....)))))). ( -42.80)
>DroEre_CAF1 8044 110 + 1
CCCCUUUGGCUACGACUUCGACCA---C----UCGGUGGUACCGGGUGGAGGCUCGAAGGCGGCCAGCGUGGCCAGCGAUCUGAACGAGUUCCUGCGCCGCAGCCCGCUCAGCCAGC
.....((((((....(((((((((---(----((((.....))))))))....))))))((((...((((((((((.((.((.....)).))))).))))).))))))..)))))). ( -50.20)
>DroMoj_CAF1 8831 98 + 1
UCCGUUUGGCUAUGACUUUGAGCC-------------------GGCGGCAGGCUCCAAGCCCGCCAGCGUGGCAAGCGACCUGAAUGAGUUCUUGCGUCGCAGCCCGCACAGCCAGC
.......((((.........))))-------------------((((((.(((.....))).))).(((.(((..((((((.(((....)))..).))))).))))))...)))... ( -40.30)
>DroAna_CAF1 8086 116 + 1
UCCCUUUGGCUACGACUUCGAUCCCUCGAUUGGCGGCGGAGCCG-GAGGUGGCUCCAAGGCCGCCAGUGUGGCCAGCGAUCUGAACGAAUUCCUGCGCCGCAGUCCCCACAGCCAGC
.....((((((..(((.((((....))))(((((((((((((((-....)))))))...))))))))(((((((((.((...........))))).))))))))).....)))))). ( -50.10)
>consensus
UCCCUUUGGCUAUGACUUCGAGCC___________________GGCGGCAGGCUCAAAGCCCGCCAGCGUGGCCAGCGAUCUGAACGAAUUCCUGCGCCGCAGCCCGCACAGCCAGC
.....((((((....(((((((((..........................)))))))))...((..((((((((((.(((........))).))).))))).))..))..)))))). (-24.20 = -24.29 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:58 2006