Locus 3301

Sequence ID 3R_DroMel_CAF1
Location 8,832,853 – 8,832,961
Length 108
Max. P 0.615600
window5329

overview

Window 9

Location 8,832,853 – 8,832,961
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 80.01
Mean single sequence MFE -31.50
Consensus MFE -20.23
Energy contribution -19.32
Covariance contribution -0.91
Combinations/Pair 1.27
Mean z-score -1.49
Structure conservation index 0.64
SVM decision value 0.17
SVM RNA-class probability 0.615600
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8832853 108 + 27905053
GCAUUCCGAACACCGGAGUCAUUCGCUACGACGACGCCGCCUUUCUCAAGAACUUGAUACCGGGCCAGCAUCUCAACAACGAGGUGCGUUACGGAUAUGAUAACUGUU
.((((((((((...((.(((..(((...))).))).))((((...((((....))))....))))..(((((((......)))))))))).)))).)))......... ( -32.20)
>DroVir_CAF1 7780 107 + 1
GCAUACCAAACACUGGCGUCAUACGCUAUGACGAUGCGGCGUUCCUCAAGAAUUUGAUACCGGGCCAGCAUCUCAACAACGAGGUGCGUUCCUGCGAGCCGCUCUGG-
.....(((..((.(((((.....)))))))..((.(((((((((.....))))......(((((...(((((((......)))))))...)))).).))))))))))- ( -35.90)
>DroPse_CAF1 7476 99 + 1
GCAUACCGAACACCGGGGUCAUACGCUACGACGACGCCGCCUUCCUCAAGAACUUGAUACCGGGACAGCAUCUCAACAACGAGGUGUGUGCCGGCCAU---------U
.......(((...(((.(((............))).)))..))).((((....))))..((((.(((.((((((......))))))))).))))....---------. ( -28.60)
>DroGri_CAF1 7629 95 + 1
GAAUACCCAACACUGGCGUCAUACGCUAUGAUGACGCCGCAUUCCUCAAAAACUUGAUACCGGGUCAGCAUCUCAACAACGAGGUGCGUUUAUUC-------------
((((((((......((((((((........)))))))).......((((....))))....)))...(((((((......)))))))...)))))------------- ( -31.40)
>DroMoj_CAF1 7820 107 + 1
GCAUACCCAACACCGGCGUCAUUCGCUAUGACGAUGCGGCCUUCCUCAAGAAUUUGAUACCGGGCCAGCAUCUCAACAACGAGGUGCGUUCCUGUGAGCCACUCUGG-
((((..((......))((((((.....))))))))))(((((...((((....))))....))))).(((((((......)))))))((((....))))........- ( -33.40)
>DroAna_CAF1 7286 97 + 1
GCAUACCCAACACCGGCGUUAUACGCUACGACGACGCCGCCUUCCUAAAGAACUUGAUACCGGGACAGCAUCUCAACAACGAGGUGCGUGGC---UAUCA--------
((...(((.....((((((..(.((...)))..)))))).(((....)))...........))).(((((((((......))))))).))))---.....-------- ( -27.50)
>consensus
GCAUACCCAACACCGGCGUCAUACGCUACGACGACGCCGCCUUCCUCAAGAACUUGAUACCGGGCCAGCAUCUCAACAACGAGGUGCGUUCCUGCGAUC_________
............((((.((((...((..((....))..)).(((.....)))..)))).))))....(((((((......)))))))..................... (-20.23 = -19.32 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:57 2006