| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,832,228 – 8,832,318 |
| Length | 90 |
| Max. P | 0.582818 |
| Location | 8,832,228 – 8,832,318 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.53 |
| Mean single sequence MFE | -35.10 |
| Consensus MFE | -20.59 |
| Energy contribution | -22.15 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8832228 90 + 27905053 GGCAAUGUCAACUAUUACACGCCCCAAGAGGCUGUGGCGGAAGCGGCACGAGCCGCCCAGCAAAAGCUG---------CAGCAGCAGCAGCAGGCC--GGU------------ (((..............((((((......))).)))((((..(((((....))))))).......((((---------(....))))).))..)))--...------------ ( -34.60) >DroGri_CAF1 6962 110 + 1 AGCAAUGUCAACUAUUAUACGCCGCAGGAGGCGGUCGCCGAGGCGGCGCGUGCCACACAACAGAAGCAGUCAUCGCCGCCGCCUC---CGCCGCCAUUGGUUGUCACGCCCAG .((..((.((((((......(((......)))(((.((.((((((((((((((..(......)..))).....)).)))))))))---.)).)))..)))))).)).)).... ( -43.80) >DroSec_CAF1 6568 84 + 1 GGCAAUGUCAACUAUUACACGCCCCAAGAGGCUGUGGCGGAAGCGGCACGAGCCGCCCAGCAAAAGCUG---------CAGCAAC---AGCAGGCC----------------- (((..((((........((((((......))).)))((....))))))...)))(((((((....))))---------..((...---.)).))).----------------- ( -30.20) >DroSim_CAF1 6240 84 + 1 GGCAAUGUCAACUAUUACACGCCCCAAGAGGCUGUGGCGGAAGCGGCACGAGCCGCCCAGCAAAAGCUG---------CAGCAGC---AGCAGGCC----------------- (((..............((((((......))).)))((((..(((((....))))))).))....((((---------(....))---)))..)))----------------- ( -31.80) >consensus GGCAAUGUCAACUAUUACACGCCCCAAGAGGCUGUGGCGGAAGCGGCACGAGCCGCCCAGCAAAAGCUG_________CAGCAGC___AGCAGGCC_________________ (((..((((........((((((......))).)))((....))))))...)))(((((((....))))...........((.......)).))).................. (-20.59 = -22.15 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:56 2006