| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,827,609 – 8,827,705 |
| Length | 96 |
| Max. P | 0.526043 |
| Location | 8,827,609 – 8,827,705 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 71.89 |
| Mean single sequence MFE | -21.67 |
| Consensus MFE | -8.92 |
| Energy contribution | -9.53 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.41 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8827609 96 - 27905053 A-UACUUACUCAUCAGUGACUUUGAAAGGUGAGUAUCUGCGAUGAGGAAAAGAAAGCCUAUUAAGAAACAUCCACGUUGGAAACAAUUUAGGUGAGA .-((((((((..((((.....))))..))))))))(((..(((.(((.........)))))).)))..((((...((((....))))...))))... ( -22.20) >DroPse_CAF1 1918 87 - 1 ACCACUUACUCGUCGGUGAUUUUGAAGGGAGAGUAUCUGCAAG---AAAUAUA--GAGGUCUUAG--ACAUU-GCAUGGAAUGCAGGUUUGGUG--G .((((...(((....((..(((((...(((.....))).))))---).))...--)))....(((--((.((-((((...))))))))))))))--) ( -18.30) >DroSec_CAF1 2062 96 - 1 A-UACUUACUCAUCAGUGAUUUUGAAAGGUGAGUAUCUGCGAUCAGAAAAAGAAAGAAUAUUAAGAAACAUUCACGUUGGAAACAACUUAGGCGAGA .-((((((((..((((.....))))..))))))))(((((...............((((.((....)).))))..((((....))))....)).))) ( -20.90) >DroSim_CAF1 2026 96 - 1 A-UACUUACUCAUCAGUGAUUUUGAAAGGUGAGUAUCUGCGAUGAGAAAAAGAAAGAAUAUUAAGAAACAUUCACGUUGGAAACAACUUAGGCGAGA .-((((((((..((((.....))))..))))))))(((((...............((((.((....)).))))..((((....))))....)).))) ( -20.90) >DroEre_CAF1 2061 94 - 1 A-UACUUACUCAUCAGUGAUUUUGAAGGGUGAGUAACUGAGAAUUUGAAAAGAAACCCGUUUUAGGAACAUCCAGGAUGGGAACAAAUUAGACAU-- .-(((((((((.((((.....)))).))))))))).((((...(((....)))..((((((((.((.....))))))))))......))))....-- ( -27.10) >DroPer_CAF1 1912 86 - 1 ACCACUUACUCGUCGGUGAUUUUGAAGGGAGAGUAUCUGCAAG---AAAUAUA--GAGGUC-UAG--ACAUC-GCAUUGAUGGCAGGUUCGGGG--A .((((((.(((.((((.....)))).))).))))((((((...---.....((--(....)-)).--.((((-.....))))))))))..))..--. ( -20.60) >consensus A_UACUUACUCAUCAGUGAUUUUGAAAGGUGAGUAUCUGCGAU_AGAAAAAGAAAGAAGAUUAAGAAACAUCCACGUUGGAAACAACUUAGGCGA_A ..((((((((..((((.....))))..)))))))).........................................(((....)))........... ( -8.92 = -9.53 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:51 2006