Locus 3294

Sequence ID 3R_DroMel_CAF1
Location 8,825,114 – 8,825,205
Length 91
Max. P 0.752635
window5320

overview

Window 0

Location 8,825,114 – 8,825,205
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 88.66
Mean single sequence MFE -24.44
Consensus MFE -17.56
Energy contribution -18.68
Covariance contribution 1.12
Combinations/Pair 1.08
Mean z-score -2.08
Structure conservation index 0.72
SVM decision value 0.48
SVM RNA-class probability 0.752635
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8825114 91 - 27905053
UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUGAAAAGAAGGUGAACGAUAGUGAGUAUUUACUGAGAAAGCUUUAUA-
(((((((((.(((((((((((......)))))))..(.(((.(((....))).))).).......)))).)))))..))))..........- ( -24.80)
>DroSec_CAF1 3729 91 - 1
UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUGAAAACAAGGUGAACGAUAGUGAGUAUCUAUUAAGAAAGCUUUAUA-
(((((((((.(((((((((((......)))))))..((..(((((.......)))))..))....)))).)))))..))))..........- ( -25.00)
>DroSim_CAF1 3728 91 - 1
UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUGAAAACAAGGUGAACGAUAGUGAGUAUUUAUUAAGAAAGCUUAAUA-
(((((((((.(((((((((((......)))))))..((..(((((.......)))))..))....)))).)))))..))))..........- ( -22.30)
>DroEre_CAF1 3848 91 - 1
UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUAAAA-GAGUGUCAGAGCUUGUGAGUAUUUAUUCAGAAAGCUUGAUUA
(((((((((((...(((((((......)))))))...))..)))).)))-))..((((.(((((.(((((....)))))..))))))))).. ( -26.30)
>DroYak_CAF1 3745 92 - 1
UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUGAAAAGAUGAUAAUGGAUAGUUAGUAUUUAUUAAGAAGGCUUGGUAG
.((....((((...(((((((......)))))))......(((((....))))).....))))....))....(((((((....))))))). ( -23.80)
>consensus
UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUGAAAAGAAGGUGAACGAUAGUGAGUAUUUAUUAAGAAAGCUUGAUA_
(((((((((.(((((((((((......)))))))....(((.(((....))).))).........)))).)))))..))))........... (-17.56 = -18.68 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:49 2006