| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,818,356 – 8,818,475 |
| Length | 119 |
| Max. P | 0.530751 |
| Location | 8,818,356 – 8,818,475 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.05 |
| Mean single sequence MFE | -32.74 |
| Consensus MFE | -27.06 |
| Energy contribution | -27.50 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8818356 119 - 27905053 -CCUCAGGAUCCUUCAUCCAAUACAACAACGUGCCCCAAGGAGUAACCCACUUUCGAGGACGCCUCUUUGUCACCGUGCCACGGCGACAGCCGGGCAUUCCGUCCACCUUAAACUACAUC -.....((((....................(((...(((((((....((........))....))))))).))).(((((.((((....)))))))))...))))............... ( -29.40) >DroSec_CAF1 238325 120 - 1 UCCUAUGGAACCUUCAUCCAAUACAACAACGUGCCCCAGGGAGUGACCCACUUUCGAGGACGCCUCUUUGUCACCGUGCCACGGCGACAGCCAGGCAUUCCGUCCACCUUGAACUACAUC .....((((.......))))......(((.(((..(..(..((((...))))..)..(((.((((..(((((.(((.....))).)))))..))))..))))..))).)))......... ( -33.80) >DroSim_CAF1 256617 111 - 1 UC---------CUUCAUCCGAUACAACAACGUGCCCCAGGGAGUGACCCACUUCCGAGGACGCCUCUUUGUCACCGUGCCACGGCGGCAGCCGGGCAUUCCGUCCACCCUGAACUACAUC ..---------...................(((...(((((.(.(((.......((..((((......))))..))((((.((((....))))))))....)))).)))))...)))... ( -32.90) >DroEre_CAF1 258403 116 - 1 ----AUGGAUCCUUCAUUCAAUACAACAACGUGCCCCAGGGAGUGACCCACUUCCGAGGACGCCUCUUUGUCACUGUGCCCCGGCGCCAGGAGGGCAUCCCGUCCACCUUGAACUACAUC ----..(((((((((.......((((....(((.((..(((((((...)))))))..)).)))....))))..((((((....))).)))))))).)))).................... ( -33.90) >DroYak_CAF1 251532 120 - 1 AGCACUGGAUCCUUUAUCCAAUACAACAACGUGCCCCAGGGAGUGACCCACUUCCGAAGACGCCUCUUUGUCACUGUGCCUCGGCGACAGGAGGGCAUCCCAUCCACUUUGAACUACAUC .....(((((.....)))))......(((.(((.....(((((((...)))))))...((.(((..((((((.(((.....))).))))))..))).)).....))).)))......... ( -33.70) >consensus _CC_AUGGAUCCUUCAUCCAAUACAACAACGUGCCCCAGGGAGUGACCCACUUCCGAGGACGCCUCUUUGUCACCGUGCCACGGCGACAGCCGGGCAUUCCGUCCACCUUGAACUACAUC ......((((.((((......(((......))).....(((((((...)))))))))))..((((..(((((.(((.....))).)))))..)))).....))))............... (-27.06 = -27.50 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:39 2006