Locus 329

Sequence ID 3R_DroMel_CAF1
Location 1,253,822 – 1,253,921
Length 99
Max. P 0.788631
window552

overview

Window 2

Location 1,253,822 – 1,253,921
Length 99
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 93.40
Mean single sequence MFE -20.90
Consensus MFE -16.75
Energy contribution -16.53
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.79
Structure conservation index 0.80
SVM decision value 0.58
SVM RNA-class probability 0.788631
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1253822 99 - 27905053
--AUAAAAUAAAACGAUGUCAAACAAUUUUCAGCUGAAUGUGGCUUCAUUACGUUCAGUACAAAUAAACUGAUUUUGCAUAGCAUUUAUGUAAAUGACAAC
--..............(((((...........(((((((((((.....)))))))))))..............(((((((((...)))))))))))))).. ( -21.40)
>DroSec_CAF1 29034 101 - 1
AAAUAAAAUAAAACGAUGUCAACCAAUUUUCAACCGAAUGUGGCCUCAUUACGUUCAGUACCAAUAAACUGAUUUUGCAUAGCUUUUAUGUAAAUGACAUC
..............(((((((.(((...(((....)))..)))...........(((((........))))).(((((((((...)))))))))))))))) ( -20.30)
>DroSim_CAF1 25255 101 - 1
AAAUAAAAUAAAACGAUGUCAACCAGUUUUCAACCGAAUGUGGCCUCAUUACGUUCAGUACCAAUAAACUGAUUUUGCAUAGCUUUUAUGUAAAUGACAAC
................(((((..((((((...((.((((((((.....)))))))).))......))))))..(((((((((...)))))))))))))).. ( -21.00)
>consensus
AAAUAAAAUAAAACGAUGUCAACCAAUUUUCAACCGAAUGUGGCCUCAUUACGUUCAGUACCAAUAAACUGAUUUUGCAUAGCUUUUAUGUAAAUGACAAC
................(((((...........((.((((((((.....)))))))).))..............(((((((((...)))))))))))))).. (-16.75 = -16.53 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:33 2006