Locus 3288

Sequence ID 3R_DroMel_CAF1
Location 8,796,467 – 8,796,560
Length 93
Max. P 0.540980
window5304

overview

Window 4

Location 8,796,467 – 8,796,560
Length 93
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 77.35
Mean single sequence MFE -32.39
Consensus MFE -22.91
Energy contribution -22.63
Covariance contribution -0.27
Combinations/Pair 1.40
Mean z-score -0.97
Structure conservation index 0.71
SVM decision value 0.01
SVM RNA-class probability 0.540980
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8796467 93 - 27905053
CAUUUCUUAAC---------CA---AUUUCAGGCGACGGCGGCGUGUUGGCCGUAUUUUGGCCAUGUGAAACCGAGGCGGACUGCACAGCUGACGGUACUAGCUG
...........---------..---......(((.((.(((((....((((((.....))))))((((...(((...)))....)))))))).).))....))). ( -26.30)
>DroVir_CAF1 267941 92 - 1
CA-UAUUUAAU---------UG---AUUGCAGGCGACGGCGGUGCAUUGGCUGUAUUUUGGCCAUGUGAAAGCGAUGCGGACUGCACAGCUGAUGGCUCUAGCUG
..-........---------..---...((((((.(((((.(((((.((((((.....))))))(((....)))........))))).)))).).)).)).)).. ( -27.30)
>DroPse_CAF1 246856 105 - 1
CAUUUUUAAACUGCAUGAUUCAAUCGUUGCAGGCGAAGGAGGCGUCUCGGCCGUUUUUUGGCCAUGUGAAAGCGAGGCGGACUGCACAGCUGACGGCUCCAGCUG
..........(((((((((...)))).))))).....(.((.(((((((((((.....)))))..((....))))))))..)).).((((((.......)))))) ( -38.50)
>DroWil_CAF1 267689 91 - 1
--UAUUCUAAU---------CA---UUUGUAGGCGACGGCGGCGUUUUGGCCGUCUUUUGGCCAUGUGAAAGUCAAGAAGACUGCACAGCUGACGGCUCCAUUUG
--.........---------((---..((.((.((.((((.......((((((.....))))))((((..((((.....)))).)))))))).)).)).))..)) ( -29.00)
>DroAna_CAF1 206345 91 - 1
--UUUUUGUAU---------AA---AUUGCAGGCGACGGCGGCGCGUUGGCUGUUUUUUGGCCAUGUGAAAGCGAGGCAGACUGCACAGCUGACGGCUCGAGCUG
--..((((((.---------..---..))))))...(((((((.(((..(((((......(((.(((....))).))).......)))))..))))))...)))) ( -32.82)
>DroPer_CAF1 241671 105 - 1
CAUUUUUCAACUGCAUGAUUCAAUCGUUGCAGGCGAAGGAGGCGUCUCGGCCGUUUUUUGGCCAUGUGAAAGCGAGGCGGACUGCACAGCUGACGGCUCCAGCUG
.....(((..(((((((((...)))).)))))..)))(.((.(((((((((((.....)))))..((....))))))))..)).).((((((.......)))))) ( -40.40)
>consensus
CAUUUUUUAAC_________CA___AUUGCAGGCGACGGCGGCGUCUUGGCCGUUUUUUGGCCAUGUGAAAGCGAGGCGGACUGCACAGCUGACGGCUCCAGCUG
...........................(((((((.......))((((((((((.....)))))..((....)))))))...)))))((((((.......)))))) (-22.91 = -22.63 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:32 2006