Locus 3286

Sequence ID 3R_DroMel_CAF1
Location 8,780,851 – 8,780,941
Length 90
Max. P 0.542201
window5300

overview

Window 0

Location 8,780,851 – 8,780,941
Length 90
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.92
Mean single sequence MFE -22.04
Consensus MFE -14.48
Energy contribution -14.37
Covariance contribution -0.11
Combinations/Pair 1.18
Mean z-score -1.11
Structure conservation index 0.66
SVM decision value 0.02
SVM RNA-class probability 0.542201
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8780851 90 - 27905053
GUUGAUGUGACA---GC---------GCCGCGCACUUUGUCAAUG-----GUGU---CUGUGAUAAAGUGUUUUAAAUUCCAAAUGCAUUCAACGUUAAAUGCGAAAAAG----------
((((((((.(((---((---------((((.((.....))...))-----))).---)))).)))..((((((........))))))..)))))................---------- ( -19.40)
>DroVir_CAF1 251149 107 - 1
UUUGAUGUGUCAUCAGCGCUCCUUGCGCCGCGCACUUUGUCAACGUGCCUGUGC---CUGUGAUAAAGUGCUUUAAACUUAAAAUGCAUUCAACGUUAAAUGCAAAAAAG----------
..(((((...)))))((((.....))))...(((((((((((.((.((....))---.))))))))))))).............((((((........))))))......---------- ( -31.20)
>DroGri_CAF1 208608 87 - 1
UUUGAUGCAACAUCAGC--------------UCACUUUGUCAAUG------UGC---CUGUGAUAAAGUGAUUUAAACUCAAAACGCAUUCAACGUUAAAUGCAAAAAAG----------
.((((((...)))))).--------------(((((((((((...------...---...)))))))))))..............(((((........))))).......---------- ( -18.50)
>DroWil_CAF1 248090 93 - 1
GUUGAUGUGACA---GC---------GCCGCGCACUUUGUCAAUC-----CUGUGCCCUCUGAUAAAGUGUUUUAAAUUCCAAAUGCAUUCAACGUUAAAUGCGAAAAAG----------
(((((.(((.((---((---------...))(((((((((((...-----..........))))))))))).............))))))))))................---------- ( -18.12)
>DroMoj_CAF1 310377 102 - 1
UUUGAUGUGACAUCAGC---------GACGCGCACUUUGUCAAUU------CGU---CCGUGAUAAAGUGCUUUAAACUCGAAAUGCAUUCAACUUUAAACUCGACUCGACUCGAGCUGC
.((((.(((.(((...(---------((...(((((((((((...------...---...))))))))))).......)))..)))))))))).......(((((......))))).... ( -23.80)
>DroPer_CAF1 220247 91 - 1
GUUGAUGUGACA---GC---------GCCGCGCACUUUGUCAAUGG----GUGU---CUGUGAUAAAGUGUUUUAAAUUCCAAAUGCAUUCAACGCUAAAUGCAAAAAAG----------
(((((.(((.((---((---------...))(((((((((((.(((----....---)))))))))))))).............))))))))))((.....)).......---------- ( -21.20)
>consensus
GUUGAUGUGACA___GC_________GCCGCGCACUUUGUCAAUG_____GUGU___CUGUGAUAAAGUGUUUUAAACUCCAAAUGCAUUCAACGUUAAAUGCAAAAAAG__________
...............................(((((((((((..................))))))))))).............((((((........))))))................ (-14.48 = -14.37 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:28 2006