Locus 3284

Sequence ID 3R_DroMel_CAF1
Location 8,775,327 – 8,775,417
Length 90
Max. P 0.695016
window5298

overview

Window 8

Location 8,775,327 – 8,775,417
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -25.60
Consensus MFE -24.36
Energy contribution -24.76
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 0.95
SVM decision value 0.34
SVM RNA-class probability 0.695016
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8775327 90 - 27905053
GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGAGCUGGCAUUUUCUUUGCCGUCAGUGCAAUUGUUUCGGUGGCAACCAU
((...(((((............(((((((((.....)))....)))))).........((((.((((...))))...))))))))))).. ( -24.10)
>DroSec_CAF1 195797 90 - 1
GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGUGCUGGCAUUUUCUUUGCCGUCAGUGCAAUUGUGUCGGUGGCAACCAU
((...((((((((..(((....(((((((((.....)))....)))))).......(((((....).))))..)))..)))))))))).. ( -26.20)
>DroSim_CAF1 213125 90 - 1
GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGAGCUGGCAUUUUCUUUGCCGUCAGUGCAAUUGUGUCGGUGGCAACCAU
((...((((((((..(((....(((((((((.....)))....)))))).......(((((....).))))..)))..)))))))))).. ( -26.20)
>DroEre_CAF1 213775 90 - 1
GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGAGCUGGCAUUUUCUUUGCCGUCAGUGCAAUUGUGUCGGUGGCAACCAU
((...((((((((..(((....(((((((((.....)))....)))))).......(((((....).))))..)))..)))))))))).. ( -26.20)
>DroYak_CAF1 206627 90 - 1
GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGAGCUGGCAUUUUCUUUGCCGACAGUGCAAUUGUGUCCGUGGCAAGCAU
.((..(((((((...((((((.(((((((((.....)))....)))((((.......))))))).))).....)))...))))))))).. ( -25.30)
>consensus
GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGAGCUGGCAUUUUCUUUGCCGUCAGUGCAAUUGUGUCGGUGGCAACCAU
.(((((((.(((..........(((((((((.....)))....)))))).......(((((....).))))..))).)))))))...... (-24.36 = -24.76 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:26 2006