Locus 3283

Sequence ID 3R_DroMel_CAF1
Location 8,772,176 – 8,772,266
Length 90
Max. P 0.996156
window5297

overview

Window 7

Location 8,772,176 – 8,772,266
Length 90
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 69.65
Mean single sequence MFE -13.77
Consensus MFE -8.35
Energy contribution -9.38
Covariance contribution 1.03
Combinations/Pair 1.07
Mean z-score -2.60
Structure conservation index 0.61
SVM decision value 2.66
SVM RNA-class probability 0.996156
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8772176 90 + 27905053
CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGACUCUAACACAUUCAACAAACCACAGUGGUGGCAAAAAUAU-------UGGAAAUAU--UGGAAACG
(((((....((....(((((.((((((((((...........................)))))))))).))))-------).))..)))--))...... ( -15.93)
>DroSec_CAF1 192699 81 + 1
CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGACUCUAACACAUUCAACAAAACACAGUGGUGGCAAAAAUAU------------------UGGACACC
.........((....(((((.((((((((((...........................)))))))))).))))------------------).)).... ( -13.73)
>DroSim_CAF1 210036 75 + 1
CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGA------CACAUUCAACAAAACACAGUGGUGGCAAAAAUAU------------------UGAAAACA
...............(((((.((((((((((..------...................)))))))))).))))------------------)....... ( -13.80)
>DroEre_CAF1 210635 68 + 1
CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGAC------------U-CACAGCACAGUGGUGGCAAAAAUAU------------------UGGCAACA
...............(((((.(((((((((..((------------(-........)))))))))))).))))------------------)(....). ( -15.30)
>DroYak_CAF1 203516 69 + 1
CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGAC------------AACACAGCACAGUGGUGGCAGAAAUAU------------------UGGAAACC
...............(((((.((((((((((...------------............)))))))))).))))------------------)(....). ( -14.86)
>DroAna_CAF1 181918 87 + 1
CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGACUGCAAGGCAUACA------------CUCGGAUAAAAAAUGAUCUAUAAGAAUCAUGUUAAAUAAA
...................(((.((((............)))).)))------------......(((...((((((.....).))))).)))...... (  -9.00)
>consensus
CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGAC_____CACAUUCAACAAAACACAGUGGUGGCAAAAAUAU__________________UGGAAACA
................((((.((((((((((...........................)))))))))).)))).......................... ( -8.35 =  -9.38 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:25 2006