Locus 3282

Sequence ID	3R_DroMel_CAF1
Location	8,771,133 – 8,771,226
Length	93
Max. P	0.984265

overview

Window 5

Location	8,771,133 – 8,771,226
Length	93
Sequences	6
Columns	98
Reading direction	forward
Mean pairwise identity	90.21
Mean single sequence MFE	-33.63
Consensus MFE	-28.75
Energy contribution	-30.33
Covariance contribution	1.58
Combinations/Pair	1.04
Mean z-score	-2.89
Structure conservation index	0.85
SVM decision value	1.97
SVM RNA-class probability	0.984265
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8771133 93 + 27905053
CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUCGGAUAAGUGCAAGGAGCAGCCGCCUGCCUGCUCCUUUUCCAAAUAC-----
....(((.(((.((...((((.....)))).(((((((..((((((......))))))..))))))).))..))).)))..............----- ( -32.70)
>DroSec_CAF1 191648 93 + 1
CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUCGGAUAAGUGCAAGGAGCAGCCGCCUGCCAGCUCCUUUUCCAAAUAC-----
....(((((((.((...((((.....)))).(((((((..((((((......))))))..))))))).))..)))))))..............----- ( -36.50)
>DroSim_CAF1 208991 93 + 1
CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUCGGAUAAGUGCAAGGAGCAGCCGCCUGCCAGCUCCUUUUCCAAAUAC-----
....(((((((.((...((((.....)))).(((((((..((((((......))))))..))))))).))..)))))))..............----- ( -36.50)
>DroEre_CAF1 209572 93 + 1
CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUUGGAUAAGUGCAAGGAGCAGCCGCCUGCCGGCUCCUUUUCCAAAUAC-----
....(((((((.((...((((.....)))).(((((((..(((((((....)))))))..))))))).))..)))))))..............----- ( -36.40)
>DroYak_CAF1 202537 93 + 1
CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUCGGAUAAGUGCAAGGAGCAGCCGCCUGCCUGCUCCUUUUCCAAAUAC-----
....(((.(((.((...((((.....)))).(((((((..((((((......))))))..))))))).))..))).)))..............----- ( -32.70)
>DroAna_CAF1 180953 92 + 1
CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGUUGCUUUGUGCACUUGGAUAAGUGCAGGGAUC------CUUCCAUCUCCUGCCCCUGCCGCUGUGA
........(((.(((.(((((((...((......)).....))))))).......((((((((.------.....))).)))))...))).))).... ( -27.00)
>consensus
CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUCGGAUAAGUGCAAGGAGCAGCCGCCUGCCAGCUCCUUUUCCAAAUAC_____
....(((((((.((...((((.....)))).(((((((..((((((......))))))..))))))).))..)))))))................... (-28.75 = -30.33 +   1.58)

alignment

secondary structure

dotplot

Window 6

Location	8,771,133 – 8,771,226
Length	93
Sequences	6
Columns	98
Reading direction	reverse
Mean pairwise identity	90.21
Mean single sequence MFE	-30.81
Consensus MFE	-25.00
Energy contribution	-25.78
Covariance contribution	0.78
Combinations/Pair	1.04
Mean z-score	-2.51
Structure conservation index	0.81
SVM decision value	0.64
SVM RNA-class probability	0.809924
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8771133 93 - 27905053
-----GUAUUUGGAAAAGGAGCAGGCAGGCGGCUGCUCCUUGCACUUAUCCGAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG
-----....((((..(((((((((.(....).)))))))))((((((....)))))).....(((((..............)))))..))))...... ( -32.24)
>DroSec_CAF1 191648 93 - 1
-----GUAUUUGGAAAAGGAGCUGGCAGGCGGCUGCUCCUUGCACUUAUCCGAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG
-----.............(((.((((....(((((((...(((((((....)))))))...)))))))..((((........)))).)))).)))... ( -32.20)
>DroSim_CAF1 208991 93 - 1
-----GUAUUUGGAAAAGGAGCUGGCAGGCGGCUGCUCCUUGCACUUAUCCGAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG
-----.............(((.((((....(((((((...(((((((....)))))))...)))))))..((((........)))).)))).)))... ( -32.20)
>DroEre_CAF1 209572 93 - 1
-----GUAUUUGGAAAAGGAGCCGGCAGGCGGCUGCUCCUUGCACUUAUCCAAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG
-----....((((.......(((....)))(((((((...(((((((....)))))))...)))))))..((((........))))..))))...... ( -30.80)
>DroYak_CAF1 202537 93 - 1
-----GUAUUUGGAAAAGGAGCAGGCAGGCGGCUGCUCCUUGCACUUAUCCGAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG
-----....((((..(((((((((.(....).)))))))))((((((....)))))).....(((((..............)))))..))))...... ( -32.24)
>DroAna_CAF1 180953 92 - 1
UCACAGCGGCAGGGGCAGGAGAUGGAAG------GAUCCCUGCACUUAUCCAAGUGCACAAAGCAACUAAGCAAAACACUCGUUGCAGCCAACUUAAG
.......(((((..(((((.(((.....------.))))))((((((....)))))).....))..))..((((........)))).)))........ ( -25.20)
>consensus
_____GUAUUUGGAAAAGGAGCUGGCAGGCGGCUGCUCCUUGCACUUAUCCGAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG
..................(((..(((....(((((((...(((((((....)))))))...)))))))..((((........)))).)))..)))... (-25.00 = -25.78 +   0.78)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:24 2006