Locus 3280

Sequence ID 3R_DroMel_CAF1
Location 8,768,619 – 8,768,710
Length 91
Max. P 0.731696
window5293

overview

Window 3

Location 8,768,619 – 8,768,710
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 82.03
Mean single sequence MFE -19.18
Consensus MFE -13.00
Energy contribution -13.48
Covariance contribution 0.48
Combinations/Pair 1.06
Mean z-score -1.85
Structure conservation index 0.68
SVM decision value 0.43
SVM RNA-class probability 0.731696
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8768619 91 - 27905053
GUUGGAUGUGUGCUAUCAAAGGCGGUGGCGGAAACUACAGUGGACACUGGAUAAUGUGGAAGCAAAUCAAAAAUGAAUCAAUGUUUAUGAA
......((((.((((((......))))))(....)))))(((((((.(((....(((....)))..(((....))).))).)))))))... ( -17.10)
>DroSec_CAF1 189394 78 - 1
GUUGGAUGUGUGCUAUCAAAGGCGGUGGCGGAAGGUACAGUGGACACUGGAUACAGUGGAAGCAAAUCAAGAAUAAAA-------------
....(((...((((.((....((.(((.(....).))).))...(((((....))))))))))).)))..........------------- ( -21.10)
>DroSim_CAF1 206790 78 - 1
GUUGGAUGUGUGCUAUCAAAGGCGGUGGCGGAAGGUACAGUGGACACUGGAUAUAGUGGUAGCAAAUCAAAAAUAAAA-------------
....(((...((((((.....((.(((.(....).))).))...(((((....))))))))))).)))..........------------- ( -20.00)
>DroEre_CAF1 206259 91 - 1
GUUGGAUGUGUGCUAUCAAAGGCGGAGGCGGAAGGUACAGUGGACACUGGACGCAGUGGAAUUAAAUCAAAAACAAAUCAAUGUUUAUGAA
........((((((.((....((....)).)).)))))).....(((((....)))))........(((.(((((......))))).))). ( -18.80)
>DroYak_CAF1 199127 85 - 1
GUUGGAUGUGUGCUAUCAAAGGCGGUGGCGGAAGGUACAGUGGACACUGGACACAGUGGAAUUAAAUGGAAAAUAAGUCAAUGU------G
(((((...(((.((((.....((.(((.(....).))).))...(((((....))))).......))))...)))..)))))..------. ( -18.90)
>consensus
GUUGGAUGUGUGCUAUCAAAGGCGGUGGCGGAAGGUACAGUGGACACUGGAUACAGUGGAAGCAAAUCAAAAAUAAAUCAAUGU_______
.(((....(.(((((((......))))))).).....)))....(((((....)))))................................. (-13.00 = -13.48 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:22 2006