| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,762,599 – 8,762,697 |
| Length | 98 |
| Max. P | 0.848063 |
| Location | 8,762,599 – 8,762,697 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.45 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -21.81 |
| Energy contribution | -22.33 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848063 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8762599 98 - 27905053 ---------------GCUGCCUUUU---UC-CGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUACAGCAG---CAUCUGCACACGCAAAACUCAUU ---------------(((((.....---((-(...(((((.....).))))..))).........((((((((.....))))))))....))))---)...(((....)))......... ( -27.00) >DroVir_CAF1 227215 116 - 1 UUGCUCGAAGAUGACUGUGCCUUCUGGCUC-GGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUACACUCG---CAUCGGCACACGCAAAACUCAUU ((((.........((((.(((....))).)-)))((((((.....(((((.((((((....)))))).))))).....((((...........)---))).)))).))))))........ ( -33.10) >DroGri_CAF1 186857 98 - 1 ---------------GCUGCCAUUU---UC-CGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUACAGUCG---CAUUGGCACACGCAAAACUCAUU ---------------.......(((---(.-(((((.((((....(((((.((((((....)))))).)))))...(((((.....)))))...---...))))))))).))))...... ( -27.40) >DroWil_CAF1 226614 100 - 1 ---------------GCUGCCUU-U---UC-CGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUACAGCAGCCGCCUCGGCACACGCAAAACUCAUU ---------------..((..((-(---(.-(((((.(((.....(((((.((((((....)))))).)))))...(((((.....)))))..........)))))))).))))..)).. ( -27.20) >DroMoj_CAF1 279188 115 - 1 UGCCUUGUAGCU--CUCUACCCUUUAGCUUGGGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUCCUUAUGCGCAUCCUGUGCAUAAUACACUCG---CAUCGGCACACGCAAAACUCAUU ((((..((((..--..))))......((..(((((((((((....(((((.((((((....)))))).)))))....)).)))....)))))))---)...))))............... ( -31.10) >DroAna_CAF1 172819 98 - 1 ---------------GUUGCCUUUU---UC-CGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUACAGCGG---CCUCCGCACACGCAAAACUCAUU ---------------.......(((---(.-((((((((((....(((((.((((((....)))))).)))))....)).))).......((((---...))))))))).))))...... ( -24.80) >consensus _______________GCUGCCUUUU___UC_CGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUACAGCCG___CAUCGGCACACGCAAAACUCAUU ................................((((((((.....(((((.((((((....)))))).)))))...(((((.....)))))..........)))).)))).......... (-21.81 = -22.33 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:21 2006