Locus 3276

Sequence ID 3R_DroMel_CAF1
Location 8,743,685 – 8,743,789
Length 104
Max. P 0.913004
window5289

overview

Window 9

Location 8,743,685 – 8,743,789
Length 104
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 81.18
Mean single sequence MFE -24.47
Consensus MFE -14.71
Energy contribution -14.35
Covariance contribution -0.36
Combinations/Pair 1.17
Mean z-score -2.90
Structure conservation index 0.60
SVM decision value 1.09
SVM RNA-class probability 0.913004
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8743685 104 - 27905053
GGCU-UUUUUUUC-GCUUUCAUUCUGUUUGGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUCA-AAAAUACACCAAGCUCCAGCA
....-........-(((........((((((..........(((...(((..((((((((((((.....))))))))))))..))-)....)))))))))...))). ( -23.50)
>DroPse_CAF1 186945 106 - 1
UUCUAUUUUUUGCUGGCUCCAUUCUGUUUGGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUCC-AAAAUUUCUCAUGGUCGAACA
.........................(((((((((.((.....((((...(..((((((((((((.....))))))))))))..).-.))))....))))))))))). ( -26.80)
>DroSec_CAF1 170257 105 - 1
GGCUAUUUUUUUC-GCUUUCAUUCUGUUUGGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUCA-AAUAUACACUGAGCUCCAGCA
(((((........-..............)))))...((....((((((((..((((((((((((.....))))))))))))..))-)........)))))....)). ( -24.65)
>DroWil_CAF1 211835 102 - 1
GGUUUUUUGUUUC-UCUUUCGUUCUGCUUAGCCAUUGCAUUUGUUUAUUGUCAUUGUCAACGUUAUUUAAACGUUGACAGUUUUA-CAAUUUC-GAUUGU--UAGCA
((((....((...-.(....)....))..))))...(((.(((...(((((.((((((((((((.....))))))))))))...)-))))..)-)).)))--..... ( -23.30)
>DroAna_CAF1 159978 103 - 1
GGUUUCUCUUUUU-G---UUAUUUUUUUUUGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUUAAAAAAUUCACCGGGGUCCAACA
((..((((.....-.---...........(((....)))...((((.(((..((((((((((((.....))))))))))))..))).)))).....)))).)).... ( -21.80)
>DroPer_CAF1 182000 106 - 1
UUCUAUUUUUUGCUGGCUCCAUUCUGUUUGGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUCC-AAAAUUUCCCAUGGUCGAACA
.........................(((((((((.((.....((((...(..((((((((((((.....))))))))))))..).-.))))....))))))))))). ( -26.80)
>consensus
GGCUAUUUUUUUC_GCUUUCAUUCUGUUUGGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUCA_AAAAUUCACCAUGGUCCAACA
........................((((..((....))..............((((((((((((.....))))))))))))......................)))) (-14.71 = -14.35 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:17 2006