Locus 3273

Sequence ID 3R_DroMel_CAF1
Location 8,736,521 – 8,736,612
Length 91
Max. P 0.928693
window5285

overview

Window 5

Location 8,736,521 – 8,736,612
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 95.16
Mean single sequence MFE -30.68
Consensus MFE -27.94
Energy contribution -27.50
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -1.46
Structure conservation index 0.91
SVM decision value 1.19
SVM RNA-class probability 0.928693
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8736521 91 + 27905053
UCCGCACUGGAGCUCGUAUUCCUGGUGAGCAAUUGUAUGGCAUCGAAGCGGUUGCGCAACAAAUAGACGCCGUAAUGUCGGUGCGGUUCAA
.(((((((((.(((((.........))))).....((((((.((......(((....))).....)).))))))...)))))))))..... ( -30.60)
>DroSec_CAF1 163121 91 + 1
UCCGCACUGGAGCUCGUAUUCCUGGUGAGCAAUUGUAUGGCGUCGAAGCGGUUGCGUAACAAAUAGACGCCGUAAUGUCGGUGCGGUUCAA
.(((((((((.(((((.........))))).....(((((((((......(((....))).....)))))))))...)))))))))..... ( -35.30)
>DroSim_CAF1 180298 91 + 1
UCCGCACUGGAGCUCGUAUUCCUGGUGAGCAAUUGGAUGGCGUCGAAGCGGUUGCGUAACAAAUAGACGCCGUAAUGUCGGUGCGGUUCAA
.(((((((((.(((((.........)))))......((((((((......(((....))).....))))))))....)))))))))..... ( -34.10)
>DroEre_CAF1 179393 91 + 1
UCUGUACUGGAGCUCGUAUUCCGGGUGAGCAAUUGUAUGGCAUCGAAGCGGUUGCGUAAUAAAUAGACGCCGUAAUGUCGGUGCGGUUCAA
..(((.((((((......))))))....))).(((.((.(((((((.(((((..(..........)..)))))....))))))).)).))) ( -25.00)
>DroYak_CAF1 171758 91 + 1
UCCGUACUGGAGCUCGUAUUUCGGGUGAGCAAUUGUAUGGCAUCGAAGCGGUUGCGUAAUAAAUAGACGCCGUAGUGUCGGUGCGGUUCAA
.(((((((...(((((.....)))))..((((((((...........))))))))..........(((((....))))))))))))..... ( -28.40)
>consensus
UCCGCACUGGAGCUCGUAUUCCUGGUGAGCAAUUGUAUGGCAUCGAAGCGGUUGCGUAACAAAUAGACGCCGUAAUGUCGGUGCGGUUCAA
.(((((((((.(((((.........))))).....((((((.((......(((....))).....)).))))))...)))))))))..... (-27.94 = -27.50 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:13 2006