Locus 3270

Sequence ID 3R_DroMel_CAF1
Location 8,733,745 – 8,733,865
Length 120
Max. P 0.650522
window5281

overview

Window 1

Location 8,733,745 – 8,733,865
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 85.27
Mean single sequence MFE -19.83
Consensus MFE -13.92
Energy contribution -15.03
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -2.11
Structure conservation index 0.70
SVM decision value 0.24
SVM RNA-class probability 0.650522
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8733745 120 - 27905053
CAGAUAUAUAUGUUAUAAAAGAUUCAAGAUCACAUUCCAAGAUAUUCUUCUUAUCUGAAAUACAUUCAGAGAACUUUAAACAUUCGAUAUAUGUACAUAUCAUAAAUGAAAAAGUAGGCA
((..(((((((((....((((.(((.............((((......)))).((((((.....)))))))))))))..((((.......)))))))))).)))..))............ ( -15.60)
>DroSec_CAF1 160426 113 - 1
CAAAUAUAUAUGUAAUAAAAAAUUCAAGAUCAGAAUGCAAGAUCUUGGUAUUAUCUGAAAUCCAUUCAGAGAACAUUAAACG-------UAUGUACAUAUUAUAAACGAAAAAGUAUGCC
....(((((((((..........((((((((.........)))))))).....((((((.....)))))).........)))-------))))))((((((...........)))))).. ( -21.70)
>DroSim_CAF1 177587 113 - 1
CAAAUAUAUAUGUAAUAAAAAAUGCAAGAUCAGUAUGCAAGAUCUUGUUAUUAUCUGAAAUCCAUUCAGAGAACAUUAAACG-------UAUGUACAUAUUAUAAACGAAAAAGUAUGCC
....(((((((((..........((((((((.........)))))))).....((((((.....)))))).........)))-------))))))((((((...........)))))).. ( -22.20)
>consensus
CAAAUAUAUAUGUAAUAAAAAAUUCAAGAUCAGAAUGCAAGAUCUUGUUAUUAUCUGAAAUCCAUUCAGAGAACAUUAAACG_______UAUGUACAUAUUAUAAACGAAAAAGUAUGCC
....((((((((((.........((((((((.........)))))))).....((((((.....)))))).......................))))))).)))................ (-13.92 = -15.03 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:09 2006