Locus 3268

Sequence ID 3R_DroMel_CAF1
Location 8,727,106 – 8,727,202
Length 96
Max. P 0.754418
window5278

overview

Window 8

Location 8,727,106 – 8,727,202
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -25.64
Consensus MFE -20.68
Energy contribution -20.68
Covariance contribution 0.00
Combinations/Pair 1.13
Mean z-score -2.49
Structure conservation index 0.81
SVM decision value 0.48
SVM RNA-class probability 0.754418
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8727106 96 - 27905053
UGUCGAUUUGUGUUUGCAUUUUAUGCAGGCGCACUGUCGUCGCACACGCCCAUUGUUUUCGCAUUUUAUUUGCUUUGGUCCUGGGAAAAUAUUCCA
.(.((((.(((((((((((...)))))))))))..)))).)...((.(.(((..((...............))..))).).))((((....)))). ( -24.96)
>DroSec_CAF1 153894 96 - 1
UGUCGAUUUGUGUUUGCAUUUUAUGCAAGCGCACUGUCGUCGCACACGCCCAUUGUUUUCGCAUUUUAUUUGCUUUGGUCCUGGGAAAAUAUUCCA
.(.((((.(((((((((((...)))))))))))..)))).)...((.(.(((..((...............))..))).).))((((....)))). ( -25.36)
>DroSim_CAF1 171049 96 - 1
UGUCGAUUUGUGUUUGCAUUUUAUGCAAGCGCACUGUCGUCUCACACGCCCAUUGUUUUCGCAUUUUAUUUGCUUUGGUCCUGGGAAAAUAUUCCA
.(.((((.(((((((((((...)))))))))))..)))).)...((.(.(((..((...............))..))).).))((((....)))). ( -24.86)
>DroEre_CAF1 170133 96 - 1
UGUCGAUUUGUGUUUGCAUUUUAUGCAAGCGCACUGUCGUCGCACACACCCAUUGUUUUCGCAUUUUAUUUGCUCUGGUCCUGGGAAAAUAUUCCA
.(.((((.(((((((((((...)))))))))))..)))).).......((((........(((.......)))........))))........... ( -25.59)
>DroYak_CAF1 162386 96 - 1
UGUCGAUUUGUGUUUGCAUUUUAUGCAAGCGCACUGUCGUCGCACACGCCCAUUGUUUUCGCAUUUUAUUUGCUUUGGUCCUGCGAAAAUAUUCCA
.(.((((.(((((((((((...)))))))))))..)))).)((....))....((((((((((..(((.......)))...))))))))))..... ( -28.10)
>DroAna_CAF1 144199 92 - 1
UGUCGAUUUGUGUUUGCAUUUCAUGCUAGCGCACU-UUGUCGCACUGG--CAUUGUUUUCGCAUUUUAUUUGCUUUCGG-CUGCGAAAAUAUUCGA
....((..(((....)))..))(((((((.((...-.....)).))))--)))((((((((((........((.....)-)))))))))))..... ( -25.00)
>consensus
UGUCGAUUUGUGUUUGCAUUUUAUGCAAGCGCACUGUCGUCGCACACGCCCAUUGUUUUCGCAUUUUAUUUGCUUUGGUCCUGGGAAAAUAUUCCA
.(.((((.(((((((((((...)))))))))))..)))).)...................(((.......)))..........((((....)))). (-20.68 = -20.68 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:06 2006