| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,726,507 – 8,726,608 |
| Length | 101 |
| Max. P | 0.582006 |
| Location | 8,726,507 – 8,726,608 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.98 |
| Mean single sequence MFE | -25.59 |
| Consensus MFE | -16.48 |
| Energy contribution | -15.90 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8726507 101 + 27905053 GUGUGAGUGAGA-UGGCAA-----G-CGUGAUGGGGCUUCCCGCACGGCAAAGAAAAUGGCGUUAGCUGCAGCGCAUAGAAUUGCAAAUUCAAUUUCAAUUCAAUUGA ...(((((((((-(.....-----.-((((.((((....))))))))((((........(((((......)))))......)))).......))))).)))))..... ( -25.54) >DroVir_CAF1 187471 100 + 1 -UAC-AAAAAAC-UGUAAU-----GGUUUGUUGGGGCUGGCCGCAUGGCAAAGAAAAUGGCGUUAGCUACAGCACAUAGAAUUGCAAAUUCAAUUUCGAUUCAAUUGA -...-.......-((((((-----.((.(((((..(((((((.(((..........)))).))))))..))))).))...))))))...((((((.......)))))) ( -22.60) >DroGri_CAF1 154309 100 + 1 -UUCGAAAAAAA-UGAAAU-----G-GUUGCUGGGGUUUGCCACAUGGCAAAGAAAAUGGCGUUAGCUACAGCACAUAGAAUUGCAAAUUCAAUUUCGAUUCAAUUGA -.((((((....-....((-----(-..(((((...((((((....)))))).....((((....)))))))))))).((((.....))))..))))))......... ( -24.30) >DroWil_CAF1 189899 98 + 1 ----AAACAAAAUUGAAA-----UG-UAUGCUAGAGUUUGUAGCACGGCAAAGAAAAUGGCGUUAGCUGCAGCGCAUAGAAUUGCAAAUUCAAUUUCAAUUCAAUUGA ----...(((((((((((-----(.-(((((....(((.((((((((.((.......)).)))..)))))))))))))((((.....)))).)))))))))...))). ( -22.70) >DroAna_CAF1 143620 101 + 1 GAGCAGGAGUAC-UAGUAA-----C-UGGGCUGGGGCUUCCCGCACGGCAAAGAAAAUGGCGUUAGCUGCAGCGCAUAGAAUUGCAAAUUCAAUUUCAAUUCAAUUGA ..((.......(-(((...-----)-)))((((.((((...(((.((..........)))))..)))).))))))...((((((.((((...))))))))))...... ( -25.30) >DroPer_CAF1 164414 106 + 1 GUGGGACGGGGA-CGUCGACGAAUG-UGAGCUGGGGCUUGCAGCACGGCAAAGAAAAUGGCGUUAGCUGCAGCGCAUAGAAUUGCAAAUUCAAUUUCAAUUCAAUUGA ....((((....-))))...((((.-((((.(((((((.((((((((.((.......)).)))..))))))))(((......)))...))))..))))))))...... ( -33.10) >consensus _UGCGAAAAAAA_UGAAAA_____G_UGUGCUGGGGCUUGCCGCACGGCAAAGAAAAUGGCGUUAGCUGCAGCGCAUAGAAUUGCAAAUUCAAUUUCAAUUCAAUUGA .............................((((.((((......(((.((.......)).))).)))).)))).....((((((.((((...))))))))))...... (-16.48 = -15.90 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:05 2006