Locus 3266

Sequence ID 3R_DroMel_CAF1
Location 8,726,276 – 8,726,382
Length 106
Max. P 0.863446
window5276

overview

Window 6

Location 8,726,276 – 8,726,382
Length 106
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 87.11
Mean single sequence MFE -23.30
Consensus MFE -22.11
Energy contribution -22.43
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.59
Structure conservation index 0.95
SVM decision value 0.84
SVM RNA-class probability 0.863446
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8726276 106 + 27905053
AUAAACAGUAUACGAAAUUUAUAUUUACCUCCUAUUCUUCGCCAUAGCUUUUUAGUCAGCUGAACUAAGCUGCUUUGUGUGGCGUUAGCUAUCAAAUACUGUGGCA
........................................(((((((.......(.(((((......))))))((((.(((((....)))))))))..))))))). ( -24.60)
>DroSec_CAF1 153089 106 + 1
AUAAACAGUAUACGAAAUUUAUAUUUACCUCCUAUUCUUCGCCAUAGCUUUUUAGUCAGCUGAACUAAGCUGCUUUGUGUGGCGUUAGCUAUCAAAUACUGUGGCA
........................................(((((((.......(.(((((......))))))((((.(((((....)))))))))..))))))). ( -24.60)
>DroSim_CAF1 170244 106 + 1
AUAAACAGUAUACGAAAUUUAUAUUUACCUCCUAUUCUUCGCCAUUGCUUUUUAGUCAGCUGAACUAAGCUGCUUUGUGUGGCGUUAGCUAUCAAAUACUGUGGCA
....(((((((...((((....)))).....(((.....((((((.((.....((.(((((......)))))))..)))))))).))).......))))))).... ( -22.30)
>DroYak_CAF1 161584 90 + 1
----------------ACUAAUAUGGAUGUAAUAUUCUUCGCCAUUGCUCUUUAGUCAGCUGAACUAAGCUGCUUUGUGCGGCGUUAGCUAUCAAAUACUGUGGCA
----------------........................(((((.....(((.(..((((((.....(((((.....))))).))))))..))))....))))). ( -21.70)
>consensus
AUAAACAGUAUACGAAAUUUAUAUUUACCUCCUAUUCUUCGCCAUAGCUUUUUAGUCAGCUGAACUAAGCUGCUUUGUGUGGCGUUAGCUAUCAAAUACUGUGGCA
........................................(((((((...(((.(..((((((.....(((((.....))))).))))))..))))..))))))). (-22.11 = -22.43 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:04 2006