Locus 3263

Sequence ID 3R_DroMel_CAF1
Location 8,713,412 – 8,713,510
Length 98
Max. P 0.937356
window5270

overview

Window 0

Location 8,713,412 – 8,713,510
Length 98
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 75.67
Mean single sequence MFE -19.32
Consensus MFE -15.91
Energy contribution -16.47
Covariance contribution 0.56
Combinations/Pair 1.16
Mean z-score -1.35
Structure conservation index 0.82
SVM decision value 1.26
SVM RNA-class probability 0.937356
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8713412 98 - 27905053
CGCGUUUUGUCAAGCCAACGUUGUCUUUGGCGUAAUUGCCAAUCAGCAGGACAGACCACGCCCCCAACUCCCAACCGUA--UAUUUUUUUUCC-UGUUUUC
.((((((((((..(....)((((...((((((....)))))).))))..))))))..))))..................--............-....... ( -20.20)
>DroSec_CAF1 140109 100 - 1
CGCGUUUUGUCAAGCCAACGUUGUCUUUGUCGUAAUUGCCAAUCAGCAGGACGGACCACGCCCCCAACUCCCCACUCCACCCAUUUUUUUUUC-UUUUUUC
.((((...(((...((...((((...(((.((....)).))).)))).))...))).))))................................-....... ( -13.80)
>DroSim_CAF1 157048 101 - 1
CGCGUUUUGUCAAGCCAACGUUGUCUUUGGCGUAAUUGCCAAUCAGCAGGACGGACCACGCCCCCAACUCCCCACUCCACCCAUUUUUUUUUCCUGUUUUC
.((((...(((...((...((((...((((((....)))))).)))).))...))).))))........................................ ( -20.90)
>DroEre_CAF1 155678 96 - 1
CGCGUUUUGUCAAGCCAACGUUGUCUUUGGCAUAAUUGCCAAUCAGCAGGACGGACCACGCCCUUUUCUCUCUUCU-----UUUUUUUUUCUCUCGUGUCC
.((((...(((...((...((((...((((((....)))))).)))).))...))).))))...............-----.................... ( -21.60)
>DroYak_CAF1 148361 86 - 1
CGCGUUUUGUCAAGCCAACGUUGUCUUUGGCAUAAUUGCCAAUCAGCAGGACUGACCACGCCCUUUU---------------UUUCUCGUUUCUUGUUUCC
.((((...((((..((...((((...((((((....)))))).)))).))..)))).))))......---------------................... ( -22.90)
>DroAna_CAF1 132668 86 - 1
CGAGUUUUGUCAACCCAUCGCUGUCCUUGUCUUAAUUGCCAAUCGGCUAC-GGGACCACGCCCUCUU--------------CAUUUUUUGCGGCAGAAUCC
...((((((((..(((...((((...(((.(......).))).))))...-))).....((......--------------........)))))))))).. ( -16.54)
>consensus
CGCGUUUUGUCAAGCCAACGUUGUCUUUGGCGUAAUUGCCAAUCAGCAGGACGGACCACGCCCCCAACUCCC_ACU_____CAUUUUUUUUUC_UGUUUCC
.((((...(((...((...((((...((((((....)))))).)))).))...))).))))........................................ (-15.91 = -16.47 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:58 2006