Locus 3261

Sequence ID 3R_DroMel_CAF1
Location 8,705,188 – 8,705,287
Length 99
Max. P 0.902446
window5268

overview

Window 8

Location 8,705,188 – 8,705,287
Length 99
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 83.79
Mean single sequence MFE -23.84
Consensus MFE -21.23
Energy contribution -21.42
Covariance contribution 0.20
Combinations/Pair 1.05
Mean z-score -1.98
Structure conservation index 0.89
SVM decision value 1.02
SVM RNA-class probability 0.902446
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8705188 99 - 27905053
AGCUCAAACACUCGCCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUUCAUGUCAGCACACACCUG--CCCACAGCCAC--------
.(((.........(((....)))...((((...(((((..(((((((((......))))))))).)))))....))))..........--.....)))...-------- ( -27.00)
>DroVir_CAF1 161595 99 - 1
AGCUCAAACACUUUGCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCACGAGCACUUUAACGGCUGCAUGUCAACACA--CCUGCACCUACACCUAC--------
.............((((..((......(((....((((..(((((((((......))))))))).)))).....))).....--))))))...........-------- ( -23.70)
>DroPse_CAF1 146825 92 - 1
AGCUCAAACACUCUGCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUUCAUGUCAACACAUAC--A--CCCACU-------------
.((...........))...(((...........(((((..(((((((((......))))))))).))))).((((....))))..--.--)))...------------- ( -22.90)
>DroMoj_CAF1 202869 90 - 1
AGCUCAAACACUUUGCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUGCAUGUCAACACACACCUGUG-------------------
.((((..............))))....(((....((((..(((((((((......))))))))).)))).....))).((((....))))------------------- ( -23.14)
>DroAna_CAF1 124494 105 - 1
AGCUCAAACACUCGCCAAAGAGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUUCAUGUCAACACAUA--UA--CACACAGCCCCUAGCCAAC
.(((......(((......)))....(((....(((((..(((((((((......))))))))).))))).((((....)))).--..--....))).....))).... ( -23.40)
>DroPer_CAF1 142809 92 - 1
AGCUCAAACACUCUGCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUUCAUGUCAACACAUAC--A--CCCACU-------------
.((...........))...(((...........(((((..(((((((((......))))))))).))))).((((....))))..--.--)))...------------- ( -22.90)
>consensus
AGCUCAAACACUCUGCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUUCAUGUCAACACAUAC_UA__CCCACA_____________
.((((..............))))....(((...(((((..(((((((((......))))))))).)))))....)))................................ (-21.23 = -21.42 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:56 2006