Locus 3259

Sequence ID 3R_DroMel_CAF1
Location 8,698,466 – 8,698,564
Length 98
Max. P 0.603968
window5266

overview

Window 6

Location 8,698,466 – 8,698,564
Length 98
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.43
Mean single sequence MFE -22.23
Consensus MFE -15.94
Energy contribution -15.67
Covariance contribution -0.27
Combinations/Pair 1.30
Mean z-score -1.26
Structure conservation index 0.72
SVM decision value 0.14
SVM RNA-class probability 0.603968
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8698466 98 - 27905053
UU-UGGGUCACAAUUAAAUCCAGACUUGCAUAAGUAGUUGACUGUCAUCACUUAGUCGGUUGUCAGCUUCGUCACUAAGCCCAGUUGAUAGGCAAUAAU
((-(((((.........))))))).((((........(((((((........)))))))(((((((((..((......))..))))))))))))).... ( -21.40)
>DroPse_CAF1 140072 82 - 1
-----------------ACACACAGUUGCAUAAGUAGUUGGCUGUCAUCACUUAGUCGGUUGUCAACUUCGUCAAUAGGCCCAUUUGAUGGCCAAUAAU
-----------------...................(((((((((((.......(((.((((.(......).)))).))).....)))))))))))... ( -19.70)
>DroEre_CAF1 139053 99 - 1
UUUCGGGCCUCAAUUAAAUCCAGACUUGCAUAAGUAGUUGUCUGUCAUCACUUAGUCGGCUGUCAGCUUCGUCACUAAGCCCAGUUGAUAGGCAAUAAU
......((((..........(((((((((....))))..)))))..........((((((((...((((.......)))).))))))))))))...... ( -22.80)
>DroYak_CAF1 132816 98 - 1
UU-GGGGUCACAACUAAAUCCAGACUUGCAUAAGUAGUUGGCUGUCAUCACUUAGUCGGUUGUCAGCCUCGUCACUAAGCCCAGUUGAUAGGCAAUAAU
..-(((((.((((((.......((((.((....))))))(((((........)))))))))))..)))))........(((.........)))...... ( -22.00)
>DroAna_CAF1 117551 84 - 1
---------------ACUGCCAGACUUGCAUAAGUAGUUGGCUGUCAUCGCUUAGUUGGCUGUCAACUUUGUCACUAAGCCCAGUUGAUAGCCAAUAAU
---------------((.(((((.((.((....))))))))).)).........((((((((((((((..((......))..))))))))))))))... ( -28.20)
>DroPer_CAF1 136015 82 - 1
-----------------ACACACAGUUGCAUAAGUAGUUGGCUGUCAUCACUUAGUCGGUUGUCAACUUCGUCACUAAGCCCAUUUGAUGGCCAAUAAU
-----------------...................(((((((((((...(((((((((.........)))..))))))......)))))))))))... ( -19.30)
>consensus
_______________AAAUCCAGACUUGCAUAAGUAGUUGGCUGUCAUCACUUAGUCGGUUGUCAACUUCGUCACUAAGCCCAGUUGAUAGCCAAUAAU
....................................(((((((((((...((((((.(((.....))).....))))))......)))))))))))... (-15.94 = -15.67 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:54 2006