| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,691,677 – 8,691,789 |
| Length | 112 |
| Max. P | 0.549906 |
| Location | 8,691,677 – 8,691,789 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 90.42 |
| Mean single sequence MFE | -25.54 |
| Consensus MFE | -18.27 |
| Energy contribution | -18.15 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8691677 112 - 27905053 AGCGAGGCAUUUGGCAAUAGCAAUAGCAUUUGGCCAAAGUGCCCGAGUCGGUGUCCUAUA--U--AUAUGUAUAUACAAAUUACAGAUAACAAAAUAAUGGAAACAUCGUACGUAA .(((.((((((((((....((....)).....))).)))))))((((((.(((...((((--(--(....)))))).....))).)))..........((....)))))..))).. ( -25.80) >DroSec_CAF1 118202 114 - 1 AGCGAGGCAUUUGGCAAUAGCAAUAGCAUUUGGCCAAAGUGCCCGAGUCGGUGUCCUAUA--UAUAUAUGUAUAUACAAAUUACAGAUAACAAAAUAAUGGGAACAUCGUACUUAA ...(.((((((((((....((....)).....))).))))))))(((((((((((((((.--..(((.((((.........)))).)))........))))).)))))).)))).. ( -30.60) >DroSim_CAF1 134780 114 - 1 AGCGAGGCAUUUGGCAAUAGCAAUAGCAUUUGGCCAAAGUGCCCGAGUCGGUGUCCUAUA--UAUAUAUGUAUAUACAAAUUACAGAUAACAAAAUAAUGGAAACAUCGUUCAGAA ..((.((((((((((....((....)).....))).))))))))).(((.(((...((((--(((....))))))).....))).)))..(..((..(((....)))..))..).. ( -26.90) >DroEre_CAF1 132103 116 - 1 AGCGAGGCAUUUCGCAAUAGCAAUAGCAUUUGGCCAAAGUGCCUGAGUCGGUGUCCUAUUCCUAUAUAUAUGUAUACAAAUUACAGAUAAAAAAAUAAUGGAAAUAUUACACUUAG .((.((((((((.((....((....)).....))..))))))))..)).(((((..((((.((((.(((.((((.......)))).)))........)))).))))..)))))... ( -19.90) >DroYak_CAF1 124594 110 - 1 AGCGAGGCAUUUGGCAAUAGCAAUAGCAUUUGGCCAAAGUGCCCGAGUCGGUAUCC------UAUAUAUAUGUAUACAAAUUACAGAUAACAAAAUACUGGAAACAUUAUACUUAA ..((.((((((((((....((....)).....))).)))))))))..(((((((..------..(((...((((.......)))).))).....)))))))............... ( -24.50) >consensus AGCGAGGCAUUUGGCAAUAGCAAUAGCAUUUGGCCAAAGUGCCCGAGUCGGUGUCCUAUA__UAUAUAUGUAUAUACAAAUUACAGAUAACAAAAUAAUGGAAACAUCGUACUUAA ..((.((((((((((....((....)).....))).)))))))))....(((((((............((((.........))))..............)))..))))........ (-18.27 = -18.15 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:50 2006