| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,689,510 – 8,689,600 |
| Length | 90 |
| Max. P | 0.699577 |
| Location | 8,689,510 – 8,689,600 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 82.55 |
| Mean single sequence MFE | -26.38 |
| Consensus MFE | -17.39 |
| Energy contribution | -17.67 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8689510 90 + 27905053 GGCCUGCUUCGAGCGGAUUAAUAAUUUAAUCAGCUUUGGCCACAACUAUGGCCAAGUGUGUCAGUCCCUUGGCUCAGAUGAACUAUUUAU----- ((((......((((.((((((....)))))).)))).)))).((.((..(((((((.(.......).))))))).)).))..........----- ( -25.50) >DroSec_CAF1 116463 90 + 1 GGCCUGCUUCGAGCGGAUUGAUAAUUUAAUCAGCUUUGGCCACAACUAUGGCCAAGUGUGUCAGUCCCUUGGCUCAGAGGAAUUAUUUUU----- ...(((..(((((.(((((((((.........((((.(((((......))))))))).))))))))))))))..))).............----- ( -30.30) >DroSim_CAF1 133067 90 + 1 GGCCUGCUUUGAGCGGAUUGAUAAUUUAAUCAGCUUUGGCCACAACUAUGGCCAAGUGUGUCAGUCCCUUGGCUCAGAGGAAUUAUUUUU----- ......(((((((((((((((((.........((((.(((((......))))))))).)))))))))....))))))))...........----- ( -32.40) >DroEre_CAF1 130356 90 + 1 GGCCUGCUUCGAGCGGAUUAAAAAUUUUAUCAGCUUUGGCCUGAACUAUGGCCAAGUGUGUCAGUCCCUUGCCUCGGAAGAACUAUUUAU----- (((((((.....))))................(((((((((........))))))).))...........)))((....)).........----- ( -22.20) >DroYak_CAF1 122880 88 + 1 GGCCUGCUUCGAGCGGAUUGAUAAUUUAAUCAGCUUUGGCCAGAACUAUGGCCAAGUGUGUAAGUCCCUUGGCUCGGAAGAACUAUUU------- .......(((((((.((((((....)))))).((((((((((......)))))))).))............)))))))..........------- ( -27.20) >DroAna_CAF1 109002 81 + 1 GGACUGCUUUGAACGGAUUGAUAAUUCAAUCAGCUCUGGCCACAACU--------------CAGUCCCCGAGCUUCGAAGAACUUCUUUUUUUUA (((...((((((...((((((....))))))(((((.((..((....--------------..))..)))))))))))))...)))......... ( -20.70) >consensus GGCCUGCUUCGAGCGGAUUGAUAAUUUAAUCAGCUUUGGCCACAACUAUGGCCAAGUGUGUCAGUCCCUUGGCUCAGAAGAACUAUUUUU_____ ((.(((....((((.((((((....)))))).))))(((((........))))).......))).))..(((.((....)).))).......... (-17.39 = -17.67 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:49 2006