| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,688,025 – 8,688,128 |
| Length | 103 |
| Max. P | 0.657860 |
| Location | 8,688,025 – 8,688,128 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 82.86 |
| Mean single sequence MFE | -30.35 |
| Consensus MFE | -26.06 |
| Energy contribution | -25.75 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8688025 103 - 27905053 AGUGUCGUCUCCGUCGUCGUCGCUCGUUAGAAUUUGCGGAUUGAAUUUCAAUGGCGAUUGAUGACGGCU----GCAUGUGUGUGUGCACUGCGAAUAAAUAGUAUUA ....((....(((((((((((((.((((..(((((.......)))))..)))))))).)))))))))..----(((.((((....)))))))))............. ( -33.10) >DroEre_CAF1 128921 103 - 1 AGUGUCGUCUCCGUCGUCGUCGCUCGUUAGAAUUUGCGGAUUGAAUUUCAAUGGCGAUUGAUGACGGCU----GCAUGUGUGUGUGCACUGCAAAUAAAAAUGAGUA ....((((..(((((((((((((.((((..(((((.......)))))..)))))))).))))))))).(----(((.((((....)))))))).......))))... ( -34.60) >DroWil_CAF1 138855 91 - 1 UGUGUCGUC---AUUGGCGUUGCUCGUUAGAAUUUGCGGAUUGAAUUUCAAUGGCGAUUGAUGAUGCCUGCCUGCAUGUGUGUGAGUUUUGUGA------------- .((((((((---(.....(((((.((((..(((((.......)))))..))))))))))))))))))..((..(((....)))..)).......------------- ( -20.30) >DroYak_CAF1 121407 103 - 1 AGUGUCGUCUCCGUCGUCGUCGCUCGUUAGAAUUUGCGGAUUGAAUUUCAAUGGCGAUUGAUGACGGCU----GCAUGUGUGUGUGCACUGCGAAUAAAGAGUAUUA ((((((....(((((((((((((.((((..(((((.......)))))..)))))))).))))))))).(----(((.((((....))))))))......)).)))). ( -33.40) >consensus AGUGUCGUCUCCGUCGUCGUCGCUCGUUAGAAUUUGCGGAUUGAAUUUCAAUGGCGAUUGAUGACGGCU____GCAUGUGUGUGUGCACUGCGAAUAAA_AGUAUUA ..........(((((((((((((.((((..(((((.......)))))..)))))))).)))))))))......(((.((((....)))))))............... (-26.06 = -25.75 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:48 2006