| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,679,158 – 8,679,254 |
| Length | 96 |
| Max. P | 0.566007 |
| Location | 8,679,158 – 8,679,254 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.48 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -14.34 |
| Energy contribution | -15.01 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.566007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8679158 96 + 27905053 UGUC--C---UCG---------UUGCUUGUGCAUAUU--------GUGAAUGCGCGCAUUUCGAGCACGUGAUUGAGAUUUUUACAUUUAAAACGUGACUGAAAUAUUUUGCAGUUU--C ....--.---...---------((((..((((((...--------....))))))..((((((..(((((.....((((......))))...)))))..)))))).....))))...--. ( -20.50) >DroVir_CAF1 128139 94 + 1 ------C---CUC---------UCGCUUGUGCAUAUU--------UUGAAUGAGCGCAUUUCGAUCACGUGAUUGAGAUUUUUACAUUUAAAACGUGACUGAAAUAUUUUACAGCCUCUC ------.---...---------.((((..(.((....--------.)).)..)))).((((((.((((((.....((((......))))...)))))).))))))............... ( -19.40) >DroGri_CAF1 104996 101 + 1 UGUGUUCAGUUGU---------UCGCCUGUGCAUAUU--------UUGAAUGCGCGCAUUUCGAUCACGUGAUUGAGAUUUUUACAUUUAAAACGUGACUGAAAUAUUUUGCAACUU--C .......((((((---------..((..((((((...--------....))))))))((((((.((((((.....((((......))))...)))))).)))))).....)))))).--. ( -24.60) >DroWil_CAF1 128875 112 + 1 UGGC--C---UCAGUUAUGGUUCUCCUUUUGGAUGUGGUUCUGCACUGAAUGCGCGCAUUUCGAUCACGUGAUUGAGAUU-UUACAUUUAAAACGUGACUGAAAUAUUUUGCAGUUU--C ....--.---((((((((((....))((((((((((((....((.(.....).))..(((((((((....))))))))).-)))))))))))).))))))))...............--. ( -27.00) >DroMoj_CAF1 163021 90 + 1 ------------C---------UUGCUUGUGCAUAUU--------UUGAAUGCGCGCAUUUCGAUCACGUGAUUGAGAUUUUUACAUUUAAAACGUGACUGAAAUAUUUUGCAGCCUCU- ------------.---------((((..((((((...--------....))))))..((((((.((((((.....((((......))))...)))))).)))))).....)))).....- ( -21.60) >DroPer_CAF1 116623 96 + 1 UUAG--C---UGG---------UAGCCUGUGCAUAUU--------CUGAAUGCGCGCAUUUCGAUCACGUGAUUGAGAUUUUUACAUUUAAAACGUGACUGAAAUAUUUUCCAGUUU--C ..((--(---(((---------..((..((((((...--------....))))))))((((((.((((((.....((((......))))...)))))).)))))).....)))))).--. ( -26.10) >consensus UG____C___UCC_________UUGCUUGUGCAUAUU________UUGAAUGCGCGCAUUUCGAUCACGUGAUUGAGAUUUUUACAUUUAAAACGUGACUGAAAUAUUUUGCAGCUU__C ............................((((((...............))))))..((((((.((((((.....((((......))))...)))))).))))))............... (-14.34 = -15.01 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:44 2006