| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,662,964 – 8,663,074 |
| Length | 110 |
| Max. P | 0.751108 |
| Location | 8,662,964 – 8,663,074 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.21 |
| Mean single sequence MFE | -32.92 |
| Consensus MFE | -25.17 |
| Energy contribution | -25.73 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.751108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8662964 110 + 27905053 AAUUUUUCCUACUGCACUUUUUGUGCUGAUUUCCAGUGGUUGCUCCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA--UGGCGGAGCAUCAAGGA--- ......((((...((((.....))))((((((((.(((((((...))))))).....(((.....)))((((((.((........))....))--)))))))).))))))))--- ( -35.00) >DroSec_CAF1 89827 110 + 1 UACUUUUCCUACUGCACUUUUUGUGCUUAUUUUCAGUGGCUGCUCCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA--UGGCGGAUCAUCAUGGA--- .............((((.....)))).........(((((((...)))))))...(((((.......(((((((.((........))....))--)))))......))))).--- ( -31.42) >DroSim_CAF1 106305 110 + 1 AAUUUUUCCUACUGCACUUUUUGUGCUUAUUUUCAGUGGCUGCUUCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA--UGGCGGAGCAUCAUGGA--- .............((((.....)))).........(((((((...)))))))...(((((...((..(((((((.((........))....))--)))))..))..))))).--- ( -35.40) >DroEre_CAF1 103284 96 + 1 AUUUUU--------------CCGUGCUGAUUUUCAGUGGCUGUUCCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA--CGGCGGAGCAUCAAGGA--- .....(--------------((.(((((((.....(((((((...)))))))....((((.....))))..)))))))...((((((((....--)))).)))).....)))--- ( -36.10) >DroYak_CAF1 95742 110 + 1 AUUUUUGUCCACUGCACUUUUGGUGCUGAUUUUCAGUGGCUGUUCCAACCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA--CGGCGAAGCAUCAAGGA--- .......(((...((((.....))))((((.....(((((((.......(((.....))).)))))))((.....))....((((((((....--))))).))))))).)))--- ( -33.00) >DroAna_CAF1 84096 113 + 1 AAUUUCUCAAAGUGCAUUUG--UUGCCGAUUUUCGAUUGCUGUUCCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUUGCAGAGAAACCGGCACAGUAGCAACAACAA .................(((--((((((.....))..((((((....((((....((.(((.(((...((.....))....))).))))).....)))))))))))))))))... ( -26.60) >consensus AAUUUUUCCUACUGCACUUUUUGUGCUGAUUUUCAGUGGCUGCUCCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA__CGGCGGAGCAUCAAGGA___ .......................(((((((.....(((((((...)))))))....((((.....))))..)))))))...((((((((......))))).)))........... (-25.17 = -25.73 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:37 2006